Miyakogusa Predicted Gene

Lj5g3v1531230.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1531230.2 Non Characterized Hit- tr|I1NME4|I1NME4_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,36.24,1e-16,coiled-coil,NULL; seg,NULL,CUFF.55430.2
         (348 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g484830.1 | plant IF-like protein | HC | chr1:37762733-377...   481   e-136
Medtr7g012670.1 | encodes alpha-helical IF (intermediate filamen...    63   4e-10

>Medtr1g484830.1 | plant IF-like protein | HC |
           chr1:37762733-37757558 | 20130731
          Length = 337

 Score =  481 bits (1237), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 250/329 (75%), Positives = 278/329 (84%), Gaps = 1/329 (0%)

Query: 20  VDPXXXXXXXXXQNFRRNVVSLAAELKELRGRLAAQEKSYAIETLTRQEAETNAKSLELE 79
           VDP         Q+FRRNVVSLA+ELKELR RLA+QE+SY  ETLTRQEAETNAK +ELE
Sbjct: 10  VDPLLKDLNDKKQSFRRNVVSLASELKELRSRLASQEQSYVKETLTRQEAETNAKVMELE 69

Query: 80  IGRLQKNLDERNEQLQASASSAEKYLMELDDLKTQLVXXXXXXXXXXXXXXXXQLHCVEL 139
           IG+LQK L+E+NEQLQ S SSAEK++ ELDDL+TQLV                QL C EL
Sbjct: 70  IGKLQKKLEEKNEQLQVSTSSAEKHIKELDDLRTQLVITRATADSSAASTQSSQLQCFEL 129

Query: 140 VKELDEKNSSLREHEDRVTRLAEQLENLQKDLQARESSQKHLKDEVFRIEHDIMEALTKA 199
            KELDEKNSSLREHE+RV RL EQL+NLQKDL++RESSQK L+DEVFRIE DIMEAL K+
Sbjct: 130 QKELDEKNSSLREHEERVIRLGEQLDNLQKDLKSRESSQKQLRDEVFRIERDIMEALAKS 189

Query: 200 GDNKDRELRKILDEVSPRNFEKMNKLLVVKDEEIVRMKDEIKIMSAHWKLKTKELESQLE 259
           G+NKD ELRKILDEVSP+N EKMNKLLVVKD+EIVR+KDEIKIMSAHWKLKTKELESQLE
Sbjct: 190 GENKDCELRKILDEVSPKNIEKMNKLLVVKDDEIVRLKDEIKIMSAHWKLKTKELESQLE 249

Query: 260 KQRRADQELKKKVLKLEFCLQETRSQTRKLQRMGERRDKAIKELRDQLAAKRKRGVAAEE 319
           KQRRADQ+LKK+VLKLEFCLQE RSQTRKLQRMGERRDKAIKEL+DQLA K ++ V+  E
Sbjct: 250 KQRRADQDLKKRVLKLEFCLQEARSQTRKLQRMGERRDKAIKELKDQLAGK-QQTVSDAE 308

Query: 320 KQQQNFWDTSGFKIVVSMSMLVLVAFSKR 348
           KQ QNFWDTSGFKIV+SMSMLVLV FSKR
Sbjct: 309 KQNQNFWDTSGFKIVMSMSMLVLVVFSKR 337


>Medtr7g012670.1 | encodes alpha-helical IF (intermediate
           filament)-like protein, putative | HC |
           chr7:3492799-3492981 | 20130731
          Length = 60

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 41/54 (75%), Gaps = 2/54 (3%)

Query: 146 KNSSLREHEDRVTRLAEQLENLQKDLQARESSQKHLKDEVFRIEHDIMEALTKA 199
           + SSLREHE+   RL  QL+NLQK+LQAR+ SQ  L+DEVF IE  IMEAL K+
Sbjct: 2   RKSSLREHEEHAIRLGGQLDNLQKNLQARKFSQ--LRDEVFSIERHIMEALAKS 53