Miyakogusa Predicted Gene

Lj5g3v1531170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1531170.1 Non Characterized Hit- tr|I1NEV8|I1NEV8_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,46.39,0.00000000000003,seg,NULL; zf-U1,Zinc finger, U1-C type;
zf-CCCH,Zinc finger, CCCH-type; no description,NULL; zinc
fi,CUFF.55424.1
         (137 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g084750.1 | U1 zinc finger protein | HC | chr1:37727903-37...   100   7e-22

>Medtr1g084750.1 | U1 zinc finger protein | HC |
           chr1:37727903-37726250 | 20130731
          Length = 122

 Score = 99.8 bits (247), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/137 (43%), Positives = 71/137 (51%), Gaps = 15/137 (10%)

Query: 1   MPQRKFYCDYCDKLFQDTPGDRKRHARGIQHQQAKARWYDSIKXXXXXXXXXXXXXXXXX 60
           M  +K+YC+YCDK FQDT  DRKRH+ GIQH+QAK+RWYDS K                 
Sbjct: 1   MAMKKYYCEYCDKQFQDTHLDRKRHSAGIQHKQAKSRWYDSFK----------PEHHNPI 50

Query: 61  XXXXXXXVNTGFCRYGDSCNYIHPNANNMQQQPAIISTQGNVVRDSMGMGVSWXXXXXXX 120
                  VNTGFCRYGDSC Y HPN    Q      +T GN+V D+  MGVS+       
Sbjct: 51  PPFCFHFVNTGFCRYGDSCKYFHPNTQQQQPI---TTTPGNIVGDT--MGVSFGNLPPSL 105

Query: 121 XXXXXXXXXXXXFVDWG 137
                       F+DWG
Sbjct: 106 QPPPEVGYSNLPFLDWG 122