Miyakogusa Predicted Gene

Lj5g3v1529860.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1529860.2 Non Characterized Hit- tr|G7KBS3|G7KBS3_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,46.23,0.0000000000001,HMG_BOX_2,High mobility group,
superfamily; no description,High mobility group, superfamily;
coiled-,CUFF.55398.2
         (189 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g080030.1 | ARID/bright DNA-binding domain protein | LC | ...    96   1e-20
Medtr1g084150.1 | HMG (high mobility group) box protein | HC | c...    93   2e-19
Medtr5g095070.1 | ARID/bright DNA-binding domain protein | HC | ...    87   1e-17

>Medtr5g080030.1 | ARID/bright DNA-binding domain protein | LC |
           chr5:34254593-34257678 | 20130731
          Length = 412

 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 92/160 (57%), Gaps = 16/160 (10%)

Query: 33  APSNNKEMKKRKGAPVGQRNAYQIFLKKECARLRACREASLDGTNIRRKATDAWKNMSEI 92
           AP+NNKE KK +G P GQ++AYQIFLK ECARL+A  +   D    + KA DAWK MS +
Sbjct: 266 APTNNKEKKKHRGVPRGQKSAYQIFLKHECARLKADHQFQGDR---KLKAIDAWKMMSPL 322

Query: 93  EKQPYVDXXXXXXXXXXXXXXXXMITNNKQPSVEDV-KEENRTSFCGD-YRVTSQPEADN 150
           EK PY +                MI    Q S ED+ ++E R   CGD Y VTSQP +++
Sbjct: 323 EKLPYEE----ESMKIKEEIKAAMI----QKSTEDLNRDEERPIVCGDYYSVTSQPLSND 374

Query: 151 SLV-NAQLGITLKMAVEVPKESLEEWDTYLSLDLPTGESK 189
           S   NA + +T K++ E P    +  D +L LD P+GE K
Sbjct: 375 SFGNNAAVDLTEKVS-EDPFFPGDLNDHHL-LDFPSGEPK 412



 Score = 73.9 bits (180), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 2/81 (2%)

Query: 17  SQVTAEAGEQPVLLPAAPSNNKEMKKRKGAPVGQRNAYQIFLKKECARLRACREASLDGT 76
           SQ+T    ++  ++  APS NKE KKR+GAP+GQ + Y IFLK+ECARL+A     + G 
Sbjct: 174 SQITGIGYQEFQVVQQAPSKNKEKKKRRGAPIGQ-SGYNIFLKQECARLKA-NHPDVGGR 231

Query: 77  NIRRKATDAWKNMSEIEKQPY 97
            I   A DAW  +S+ EK+PY
Sbjct: 232 KIIDMAIDAWNKLSDNEKRPY 252


>Medtr1g084150.1 | HMG (high mobility group) box protein | HC |
           chr1:37557535-37558637 | 20130731
          Length = 233

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/239 (35%), Positives = 116/239 (48%), Gaps = 56/239 (23%)

Query: 1   MNIEDGQRVT-LGKNCYSQVT------------AEAG-EQPVLLPAAPSNNKEMKK---- 42
           M  ED  +V  L K+  SQ+T            A AG ++P +L  APSN+KE KK    
Sbjct: 1   MADEDTLKVAKLSKDYSSQMTGAYAAIFGFLFKAGAGCQEPRVLLQAPSNDKEKKKQDKE 60

Query: 43  ---RKGAPVGQRNAYQIFLKKECARLRACREASLDGTNIRRKATDAWKNMSEIEKQPYVD 99
              R+G P GQ + YQIFLK ECARL+A  +  +DG  + R A DAW+ MS  +K+PYV+
Sbjct: 61  KKKRRGPPTGQ-SGYQIFLKHECARLKA-HDPDIDGKKVLRMAVDAWQKMSATDKEPYVE 118

Query: 100 XXXXXXXXXXXXXXXXMITNNKQPSVEDVKEENRTSF----------------------- 136
                           MIT+NKQ S ED+K++ + S                        
Sbjct: 119 ESRKIKEKQKEA----MITDNKQKSTEDLKKDEQKSTEVLKKDEKKSTQGLNLKKDDKMP 174

Query: 137 ---CGDYRVTSQPEADNSLV-NAQLGITLKMAVEVPKESLE--EWDTYLSLDLPTGESK 189
                DY VTSQP  + S V NA + +  KM  +  K+     + DTY SL++  G+SK
Sbjct: 175 GVDGDDYGVTSQPLPNYSFVNNAAVELAFKMTEKSLKDPFFPVDLDTYCSLNMLNGKSK 233


>Medtr5g095070.1 | ARID/bright DNA-binding domain protein | HC |
           chr5:41551282-41553797 | 20130731
          Length = 271

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/134 (42%), Positives = 77/134 (57%), Gaps = 22/134 (16%)

Query: 11  LGKNCYSQVTAEAGEQPVLLPAAPSNNKEMKKRKGAPVGQRNAYQIFLKKECARLRACRE 70
           + K+  SQ+T        +   APS+NKE KK+KGAP  Q + YQIFLKKECARL+A   
Sbjct: 156 ISKDYSSQITE-------VFQQAPSSNKEKKKQKGAPRNQ-SGYQIFLKKECARLKA--- 204

Query: 71  ASLDGTNI---RRKATDAWKNMSEIEKQPYVDXXXXXXXXXXXXXXXXMITNNKQPSVED 127
              D  +I   ++ A DAWK MS+I+K+PYV+                MI + KQ S +D
Sbjct: 205 ---DHRDIGVRKQMAIDAWKKMSDIDKKPYVE----ESKKIKEKNKEAMIIDIKQKSTQD 257

Query: 128 VK-EENRTSFCGDY 140
           +K +E R + CGDY
Sbjct: 258 LKRDEKRPNVCGDY 271