Miyakogusa Predicted Gene

Lj5g3v1514700.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1514700.1 tr|K1QIU7|K1QIU7_CRAGI Myosin-M heavy chain
OS=Crassostrea gigas PE=4 SV=1,30.77,4.3,seg,NULL,CUFF.55386.1
         (242 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g083987.1 | hypothetical protein | LC | chr1:37426635-3742...    50   2e-06

>Medtr1g083987.1 | hypothetical protein | LC |
           chr1:37426635-37428276 | 20130731
          Length = 228

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 41/76 (53%), Gaps = 10/76 (13%)

Query: 133 NRHHLERSFHVPNN-RPTRQYTANVGSGVNSPHAEFRPPVTGSDGHRFPIGSTPGAERD- 190
           N   + R+   P+N RP  Q        VNSP AEFRP VT S+G+RFPI    GAERD 
Sbjct: 120 NEVSILRTTDPPSNPRPASQ------KDVNSPCAEFRPTVTRSNGYRFPIRCLTGAERDS 173

Query: 191 --VCFLHPVLGEGLDE 204
             +C    V+  G+ +
Sbjct: 174 DNICHTVQVIDMGIKD 189