Miyakogusa Predicted Gene

Lj5g3v1513570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1513570.1 Non Characterized Hit- tr|K3X8E8|K3X8E8_PYTUL
Uncharacterized protein OS=Pythium ultimum
GN=PYU1_G01,37.04,5e-19,Syntaxin,Syntaxin, N-terminal;
coiled-coil,NULL; Syntaxin N-terminal domain,Syntaxin, N-terminal;
se,gene.g61835.t1.1
         (237 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g083790.1 | syntaxin of plants protein | HC | chr1:3729871...   394   e-110
Medtr7g109165.1 | syntaxin of plants protein | HC | chr7:4462452...   286   2e-77

>Medtr1g083790.1 | syntaxin of plants protein | HC |
           chr1:37298710-37303799 | 20130731
          Length = 376

 Score =  394 bits (1012), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/263 (76%), Positives = 216/263 (82%), Gaps = 28/263 (10%)

Query: 1   MATRNRTLLFRKHRDALKSVRFXXXXXXXXXXX--GPVIELVSTSLLNPNRSYTPLSTED 58
           MATRNRTL+FRK+RDALKSVR              GPVIELVSTSLLNPNRSY PLST+D
Sbjct: 1   MATRNRTLIFRKYRDALKSVRAPSSSSPPSTSSRGGPVIELVSTSLLNPNRSYAPLSTDD 60

Query: 59  PANSSKGAIPITVGLPPAWVDVSEEISANVQRARSKMAELAKAHAKALMPSFGDGKEDQH 118
           P  SSKG  PITVGLPPAWVDVSEEISANVQRAR+KMAEL+KAHAKALMPSFGDGK+DQH
Sbjct: 61  PGGSSKGLNPITVGLPPAWVDVSEEISANVQRARTKMAELSKAHAKALMPSFGDGKDDQH 120

Query: 119 AIESLTYEITDLIKRSEKKLRRLSAAGPSEDSNVRKNVQRSLATDLQNLSVELRKKQSTY 178
           AIESLT+E+TDLIKRSEK+LRRL++AGPSEDSNVRKNVQRSLATDLQ+LSV+LRKKQSTY
Sbjct: 121 AIESLTHEVTDLIKRSEKRLRRLASAGPSEDSNVRKNVQRSLATDLQSLSVDLRKKQSTY 180

Query: 179 LKRLRQQKEGQDGVDLEINLNGGKSRYEDDDLDNM------------------------- 213
           LKRLRQQKEG DGVDLEIN+NG KS+YEDDDLDNM                         
Sbjct: 181 LKRLRQQKEGHDGVDLEINMNGSKSKYEDDDLDNMIFNEHQMAKLKKSEAFTVEREKEIQ 240

Query: 214 -VVESVNELAQIMKDLSVLVIDQ 235
            VVESVNELAQIMKDLSVLVIDQ
Sbjct: 241 QVVESVNELAQIMKDLSVLVIDQ 263


>Medtr7g109165.1 | syntaxin of plants protein | HC |
           chr7:44624523-44629883 | 20130731
          Length = 404

 Score =  286 bits (731), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 157/265 (59%), Positives = 191/265 (72%), Gaps = 31/265 (11%)

Query: 1   MATRNRTLLFRKHRDALKSVRF-XXXXXXXXXXXGPVIELVSTSLLNPNR--SYTPLSTE 57
           MATRNRT+ FRK+RD++KS+R             GPVIE+V+TSLL  N   SYTPLST 
Sbjct: 1   MATRNRTVEFRKYRDSVKSLRTPLSSSASASSGGGPVIEMVNTSLLRTNNGSSYTPLSTH 60

Query: 58  DPANSSKGAIPITVGLPPAWVDVSEEISANVQRARSKMAELAKAHAKALMPSFGDGKEDQ 117
           DP  SS  +   TVGLPP+WVD SEEI+ N+Q A+ KM+EL KAHAKALMPSFGDGK+DQ
Sbjct: 61  DPGPSS-SSDAFTVGLPPSWVDDSEEIATNIQSAKVKMSELTKAHAKALMPSFGDGKDDQ 119

Query: 118 HAIESLTYEITDLIKRSEKKLRRLSAA-GPSEDSNVRKNVQRSLATDLQNLSVELRKKQS 176
             IE+LT EIT L+++SE +L+RLSA  G SEDSNVRKNVQRSLATDLQNLS++LR+KQS
Sbjct: 120 RQIETLTREITALLRKSEVRLKRLSAGRGSSEDSNVRKNVQRSLATDLQNLSMDLRRKQS 179

Query: 177 TYLKRLRQQKEGQDGVDLEINLNGGKSRYEDDDLDNM----------------------- 213
           TYLKRL+QQ+EG DG+DLE+N  G  S ++DD+ D++                       
Sbjct: 180 TYLKRLQQQQEGYDGIDLEMNFKGSSSGFQDDEFDDVGFSEEQMTKLKKNEHISAERERE 239

Query: 214 ---VVESVNELAQIMKDLSVLVIDQ 235
              V +SV+ELAQIMKDLSVLVIDQ
Sbjct: 240 IDQVAKSVHELAQIMKDLSVLVIDQ 264