Miyakogusa Predicted Gene
- Lj5g3v1513550.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1513550.1 Non Characterized Hit- tr|I1NJ43|I1NJ43_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,66.27,2e-16,PHD,Zinc
finger, PHD-finger; zf-RING_2,Zinc finger, RING-type; no
description,Zinc finger,
RING/FYVE,NODE_62393_length_2807_cov_10.026362.path2.1
(878 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g112410.1 | poxvirus Ag35 surface protein | HC | chr7:4619... 679 0.0
Medtr7g112410.2 | poxvirus Ag35 surface protein | HC | chr7:4619... 569 e-162
Medtr4g110090.1 | PHD-finger protein, putative | HC | chr4:45846... 134 3e-31
Medtr8g099585.1 | RING/U-box protein | HC | chr8:42080666-420907... 71 5e-12
Medtr6g007650.1 | methyl-CpG-binding domain protein | HC | chr6:... 55 2e-07
Medtr0001s0570.5 | RING/FYVE/PHD zinc finger protein, putative |... 50 1e-05
Medtr0001s0570.3 | RING/FYVE/PHD zinc finger protein, putative |... 50 1e-05
>Medtr7g112410.1 | poxvirus Ag35 surface protein | HC |
chr7:46190529-46186663 | 20130731
Length = 904
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/622 (58%), Positives = 409/622 (65%), Gaps = 49/622 (7%)
Query: 301 NMGLRRKVKCASEDDFIDNDPTITTTCXXXXXXXXXXXXXXXXXXCAPSEA--SDFEFTI 358
N G RKV+C DDF+DN P I T + E+ SD+EFTI
Sbjct: 288 NGGSTRKVQCDDADDFLDNVPAIRTNSRKRSVLKRRRVILEDANSGSDCESRPSDYEFTI 347
Query: 359 SXXXXXXXXXAKKLCGXXXXXXXXXXXXXXXEEAVVHEDXXXXXXXXXXXXXXXXXXXQV 418
S A +LCG E ++ED Q
Sbjct: 348 SEEEKEQVREAVQLCGNIRRNLRRASLRMENEVVGLYEDLHQQWKPPARKGKEKIEESQG 407
Query: 419 RKGKEKMEDLKSEVVKQVCGICLSEEDRRRVRGVLNCCTHYFCFACIMEWGKVESRCPVC 478
RKGKEK+EDLKSEV KQVCGICLSEE++RRVRGVLN CTHYFCFACIMEW KVESRCP+C
Sbjct: 408 RKGKEKVEDLKSEVGKQVCGICLSEENKRRVRGVLNSCTHYFCFACIMEWSKVESRCPLC 467
Query: 479 KQRFKTISKPARSSKGVELREMVIQVPERDQVYQPSEEELRSYIDPYDSVICSECLQGGD 538
KQRF+TISKPARS+ E VIQVPERDQVYQP+EEELRSYIDPY+SV+CSEC GGD
Sbjct: 468 KQRFQTISKPARSTTA---EEAVIQVPERDQVYQPTEEELRSYIDPYESVMCSECHLGGD 524
Query: 539 DGLMLLCDVCDSPAHTYCVGLGREVPEGNWYCDGCRPVALGTSSSQAQEADPIATIQSLH 598
DGLMLLCD+CDSPAHTYCVGLGREVPEGNWYCDGCRPVAL + +SQAQE+D A QSL
Sbjct: 525 DGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALASLNSQAQESDLRAATQSLP 584
Query: 599 VRPSPVHVRESIDLNLIXXXXXX-------XXXXXXXXXXVEGVSPVSGG-APTLSERRW 650
RPSPVH+RESIDLNL+ EG SP+SGG APTLSERRW
Sbjct: 585 SRPSPVHIRESIDLNLMSSPHTSFSQGFGHLSSSRFSGRSTEGASPMSGGGAPTLSERRW 644
Query: 651 IHRXXXXXX-----SMDRMTSTTGRTNGISAISSTSDLYSSQIDQSRETSSQFARTEDVG 705
IHR S+DRM STTGRTNG+SA + S+L SS+I+ RE SSQ RT+DVG
Sbjct: 645 IHRQVQQLQIQQLRSIDRMASTTGRTNGVSATGTLSNLNSSEIN--REPSSQHIRTQDVG 702
Query: 706 TSYHTFFAERLRNNISPLMQN----------------------------EALWPRLLGTP 737
TSYHTFF ERL NNISP MQN A+WP +LGT
Sbjct: 703 TSYHTFFEERLGNNISPFMQNGDPFSIRMSNSRGPVVQDSTMFSNGPVNAAIWPEILGTS 762
Query: 738 PVPNYEQALQ-FNRSNIVPDGSSFPAVKEESNFHLVHEQLESMVTSHLKSLSQNIDLGQS 796
+ +Y +RSNIV + VKEE N H+V E+L+SMV SHLK LSQ+ DLG S
Sbjct: 763 TLSDYGPIHPCSSRSNIVTEVGIPATVKEEDNLHIVKERLQSMVKSHLKRLSQDADLGYS 822
Query: 797 TFMDIAKSCMHTILAACGLEHMKSEVCTVPPPSVCPHIEMMAGGQSSLIKGCCSSCFDSF 856
TF DIA+S HTILAACGLEH SEVCTVPPPSVCPHIE++AGGQ S+IKGCCSSCFDSF
Sbjct: 823 TFKDIARSSTHTILAACGLEHNTSEVCTVPPPSVCPHIELIAGGQMSMIKGCCSSCFDSF 882
Query: 857 VGEVVKRILDTRVSSQWLRLGL 878
VG+VVK ILDTR+SSQWLRLGL
Sbjct: 883 VGDVVKSILDTRMSSQWLRLGL 904
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 36 GNRNSSDEDYCSSLDGCASEDSFDGFIV--DXXXXXFRRVRNSSRSKAKIGICSWRKNAS 93
GN + ED SLDGCA+EDSFDGFI D +RV +RS+AK G+ R N S
Sbjct: 38 GNVSDCPEDDYFSLDGCAAEDSFDGFIEDGDSEKEVIQRVTKFNRSRAKTGVRRPRTNVS 97
Query: 94 RSSRKRGRIAYADQ 107
++SRKR R+ YA+Q
Sbjct: 98 KASRKRQRVTYAEQ 111
>Medtr7g112410.2 | poxvirus Ag35 surface protein | HC |
chr7:46190529-46186663 | 20130731
Length = 865
Score = 569 bits (1467), Expect = e-162, Method: Compositional matrix adjust.
Identities = 312/565 (55%), Positives = 354/565 (62%), Gaps = 49/565 (8%)
Query: 301 NMGLRRKVKCASEDDFIDNDPTITTTCXXXXXXXXXXXXXXXXXXCAPSEA--SDFEFTI 358
N G RKV+C DDF+DN P I T + E+ SD+EFTI
Sbjct: 288 NGGSTRKVQCDDADDFLDNVPAIRTNSRKRSVLKRRRVILEDANSGSDCESRPSDYEFTI 347
Query: 359 SXXXXXXXXXAKKLCGXXXXXXXXXXXXXXXEEAVVHEDXXXXXXXXXXXXXXXXXXXQV 418
S A +LCG E ++ED Q
Sbjct: 348 SEEEKEQVREAVQLCGNIRRNLRRASLRMENEVVGLYEDLHQQWKPPARKGKEKIEESQG 407
Query: 419 RKGKEKMEDLKSEVVKQVCGICLSEEDRRRVRGVLNCCTHYFCFACIMEWGKVESRCPVC 478
RKGKEK+EDLKSEV KQVCGICLSEE++RRVRGVLN CTHYFCFACIMEW KVESRCP+C
Sbjct: 408 RKGKEKVEDLKSEVGKQVCGICLSEENKRRVRGVLNSCTHYFCFACIMEWSKVESRCPLC 467
Query: 479 KQRFKTISKPARSSKGVELREMVIQVPERDQVYQPSEEELRSYIDPYDSVICSECLQGGD 538
KQRF+TISKPARS+ E VIQVPERDQVYQP+EEELRSYIDPY+SV+CSEC GGD
Sbjct: 468 KQRFQTISKPARSTTA---EEAVIQVPERDQVYQPTEEELRSYIDPYESVMCSECHLGGD 524
Query: 539 DGLMLLCDVCDSPAHTYCVGLGREVPEGNWYCDGCRPVALGTSSSQAQEADPIATIQSLH 598
DGLMLLCD+CDSPAHTYCVGLGREVPEGNWYCDGCRPVAL + +SQAQE+D A QSL
Sbjct: 525 DGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALASLNSQAQESDLRAATQSLP 584
Query: 599 VRPSPVHVRESIDLNLIXXXXXX-------XXXXXXXXXXVEGVSPVSGG-APTLSERRW 650
RPSPVH+RESIDLNL+ EG SP+SGG APTLSERRW
Sbjct: 585 SRPSPVHIRESIDLNLMSSPHTSFSQGFGHLSSSRFSGRSTEGASPMSGGGAPTLSERRW 644
Query: 651 IHRXXXXX-----XSMDRMTSTTGRTNGISAISSTSDLYSSQIDQSRETSSQFARTEDVG 705
IHR S+DRM STTGRTNG+SA + S+L SS+I+ RE SSQ RT+DVG
Sbjct: 645 IHRQVQQLQIQQLRSIDRMASTTGRTNGVSATGTLSNLNSSEIN--REPSSQHIRTQDVG 702
Query: 706 TSYHTFFAERLRNNISPLMQN----------------------------EALWPRLLGTP 737
TSYHTFF ERL NNISP MQN A+WP +LGT
Sbjct: 703 TSYHTFFEERLGNNISPFMQNGDPFSIRMSNSRGPVVQDSTMFSNGPVNAAIWPEILGTS 762
Query: 738 PVPNYEQALQ-FNRSNIVPDGSSFPAVKEESNFHLVHEQLESMVTSHLKSLSQNIDLGQS 796
+ +Y +RSNIV + VKEE N H+V E+L+SMV SHLK LSQ+ DLG S
Sbjct: 763 TLSDYGPIHPCSSRSNIVTEVGIPATVKEEDNLHIVKERLQSMVKSHLKRLSQDADLGYS 822
Query: 797 TFMDIAKSCMHTILAACGLEHMKSE 821
TF DIA+S HTILAACGLEH SE
Sbjct: 823 TFKDIARSSTHTILAACGLEHNTSE 847
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 36 GNRNSSDEDYCSSLDGCASEDSFDGFIV--DXXXXXFRRVRNSSRSKAKIGICSWRKNAS 93
GN + ED SLDGCA+EDSFDGFI D +RV +RS+AK G+ R N S
Sbjct: 38 GNVSDCPEDDYFSLDGCAAEDSFDGFIEDGDSEKEVIQRVTKFNRSRAKTGVRRPRTNVS 97
Query: 94 RSSRKRGRIAYADQ 107
++SRKR R+ YA+Q
Sbjct: 98 KASRKRQRVTYAEQ 111
>Medtr4g110090.1 | PHD-finger protein, putative | HC |
chr4:45846699-45843403 | 20130731
Length = 614
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 90/152 (59%), Gaps = 14/152 (9%)
Query: 437 CGICLSEEDRRRVRGV-----LNCCTHYFCFACIMEWGKVESRCPVCKQRFKTISKPARS 491
CGIC E RG+ ++CC+HYFCF CIMEW K ESRCP+C+QRF + +
Sbjct: 34 CGICYIE------RGISVPAQIDCCSHYFCFVCIMEWAKHESRCPLCRQRFSNVRRLPMH 87
Query: 492 SKGVELREMVIQVPERDQVYQPSEEELRSYIDPYDSVICSECLQGGDDGLMLLCDVCDSP 551
R+ +++P RDQVY P +D C C D+ L+L+CD+CD+
Sbjct: 88 DVFSSSRD--VKIPIRDQVYHPHGNMTSGPVDSNAERKCCICDGAKDENLILICDLCDTV 145
Query: 552 AHTYCVGLGREVPEGNWYCDGCRPVALGTSSS 583
+HT+CVGLG VPEG+W+C C V+L T++S
Sbjct: 146 SHTFCVGLGYTVPEGDWFCHDC-AVSLETNAS 176
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 775 QLESMVTSHLKSLSQNIDLGQSTFMDIAKSCMHTILAACGLEHMKSEVCTVPPPSVCPHI 834
+++S+V +L L+ N LG TF +A+ HTILAAC E KS + SVC H
Sbjct: 520 EIQSLVKLNLNCLAINKQLGVETFKVVARQATHTILAACHSEQQKSNI--YSSNSVCSHT 577
Query: 835 EMMAGGQSSLIKGCCSSCFDSFVGEVVKRILD 866
+ + +S+L+ CC CF FV +VVK +L+
Sbjct: 578 DHIQFQKSNLMPNCCRQCFHVFVNDVVKSMLE 609
>Medtr8g099585.1 | RING/U-box protein | HC | chr8:42080666-42090727
| 20130731
Length = 1270
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 65/159 (40%), Gaps = 21/159 (13%)
Query: 432 VVKQVCGICLSEEDRRRVRGVLNCCTHYFCFACIMEWGKVESRCPVCKQRFKTIS-KPAR 490
V + CGIC+ D RGVL+CC H+FCF CI W + + CP+C+ F+ I+ P
Sbjct: 29 VEGETCGICM---DMVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVY 85
Query: 491 SSKGVELREMVIQVPERDQVYQPSEEELRSYIDPYDSVICSECLQGG------------- 537
+ G E + D L S+ Y CL G
Sbjct: 86 DTIGSNKVEDGSFFRDDDWSIDGKNNNL-SFPSYYIDENAVTCLDGDGCKIRNGFASVEE 144
Query: 538 DDGL--MLLCDVCDSPAHTYCVGLGRE-VPEGNWYCDGC 573
D GL + CD CD H +CVG E E W C C
Sbjct: 145 DSGLDTSIACDSCDLWYHAFCVGFDTEGTSESTWLCPRC 183
>Medtr6g007650.1 | methyl-CpG-binding domain protein | HC |
chr6:1748720-1735614 | 20130731
Length = 2161
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 524 PYDSVICSECLQGGDDGLMLLCDVCDSPAHTYCVG--LGREVPEGNWYCDGC 573
P+D +C C DD +LLCD CD+ H YC+ L R +PEGNWYC C
Sbjct: 1240 PWDEGVCKICGIDRDDDSVLLCDTCDAEYHKYCLNPPLAR-IPEGNWYCPSC 1290
>Medtr0001s0570.5 | RING/FYVE/PHD zinc finger protein, putative | HC
| scaffold0001:431394-437206 | 20130731
Length = 1231
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 510 VYQPSEEELRSYIDPYDSVICSECLQGGDDGLMLLCDVC-DSPAHTYCV-GLGREVPEGN 567
V QP +E S +D +C C G + L+ +C C D HTYC+ + +VPEG+
Sbjct: 83 VPQPEDESDESDFVEHDVKVCDICGDSGRENLLAICSRCSDGAEHTYCMREMLEKVPEGD 142
Query: 568 WYCDGCR 574
W+C+ C+
Sbjct: 143 WFCEECQ 149
>Medtr0001s0570.3 | RING/FYVE/PHD zinc finger protein, putative | HC
| scaffold0001:431394-437206 | 20130731
Length = 1231
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 510 VYQPSEEELRSYIDPYDSVICSECLQGGDDGLMLLCDVC-DSPAHTYCV-GLGREVPEGN 567
V QP +E S +D +C C G + L+ +C C D HTYC+ + +VPEG+
Sbjct: 83 VPQPEDESDESDFVEHDVKVCDICGDSGRENLLAICSRCSDGAEHTYCMREMLEKVPEGD 142
Query: 568 WYCDGCR 574
W+C+ C+
Sbjct: 143 WFCEECQ 149