Miyakogusa Predicted Gene

Lj5g3v1498070.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1498070.1 Non Characterized Hit- tr|I3T846|I3T846_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,60S
RIBOSOMAL PROTEIN L22,Ribosomal protein L22e; seg,NULL;
Ribosomal_L22e,Ribosomal protein L22e,CUFF.55342.1
         (124 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g112770.1 | ribosomal L22e family protein | HC | chr7:4640...   181   1e-46
Medtr1g083430.2 | ribosomal L22e family protein | HC | chr1:3713...   179   5e-46
Medtr1g083430.1 | ribosomal L22e family protein | HC | chr1:3713...   179   5e-46
Medtr1g088450.1 | ribosomal L22e family protein | HC | chr1:3955...   179   6e-46
Medtr3g048870.1 | ribosomal L22e family protein | LC | chr3:1815...    52   2e-07

>Medtr7g112770.1 | ribosomal L22e family protein | HC |
           chr7:46406188-46408451 | 20130731
          Length = 124

 Score =  181 bits (460), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/124 (74%), Positives = 95/124 (76%)

Query: 1   MSRXXXXXXXXXXXXXXFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDAVTVA 60
           MSR              FTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGD+V+V 
Sbjct: 1   MSRGSAAGAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVSVT 60

Query: 61  REKSKITVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEG 120
           REKSKITVTSDSNFS              HNVRDWLRVIASNKDRS+YELRYFNIAENEG
Sbjct: 61  REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSIYELRYFNIAENEG 120

Query: 121 EEED 124
           EEED
Sbjct: 121 EEED 124


>Medtr1g083430.2 | ribosomal L22e family protein | HC |
           chr1:37130720-37132909 | 20130731
          Length = 125

 Score =  179 bits (454), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 89/107 (83%), Positives = 91/107 (85%)

Query: 18  FTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDAVTVAREKSKITVTSDSNFSXX 77
           FTIDCAKPVEDKIMDIASLEKFLQERIKVGGK GALGDAVTV+REKSKI VTSDSNFS  
Sbjct: 19  FTIDCAKPVEDKIMDIASLEKFLQERIKVGGKPGALGDAVTVSREKSKIAVTSDSNFSKR 78

Query: 78  XXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 124
                       HNVRDWLRVIASNKDR+VYELRYFNIAENEGEEED
Sbjct: 79  YLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED 125


>Medtr1g083430.1 | ribosomal L22e family protein | HC |
           chr1:37130720-37132909 | 20130731
          Length = 125

 Score =  179 bits (454), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 89/107 (83%), Positives = 91/107 (85%)

Query: 18  FTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDAVTVAREKSKITVTSDSNFSXX 77
           FTIDCAKPVEDKIMDIASLEKFLQERIKVGGK GALGDAVTV+REKSKI VTSDSNFS  
Sbjct: 19  FTIDCAKPVEDKIMDIASLEKFLQERIKVGGKPGALGDAVTVSREKSKIAVTSDSNFSKR 78

Query: 78  XXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 124
                       HNVRDWLRVIASNKDR+VYELRYFNIAENEGEEED
Sbjct: 79  YLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED 125


>Medtr1g088450.1 | ribosomal L22e family protein | HC |
           chr1:39552080-39550264 | 20130731
          Length = 119

 Score =  179 bits (453), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 88/107 (82%), Positives = 91/107 (85%)

Query: 18  FTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDAVTVAREKSKITVTSDSNFSXX 77
           F IDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGD+VTV REKSKITVTSDSNFS  
Sbjct: 13  FVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKSKITVTSDSNFSKR 72

Query: 78  XXXXXXXXXXXXHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 124
                       HNVRDWLRVIASNKDR++YELRYFNIAENEGEEED
Sbjct: 73  YLKYLTKKYLKKHNVRDWLRVIASNKDRNIYELRYFNIAENEGEEED 119


>Medtr3g048870.1 | ribosomal L22e family protein | LC |
          chr3:18150002-18149252 | 20130731
          Length = 102

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 32/46 (69%)

Query: 18 FTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDAVTVAREK 63
          F I+ A PV+DKI+DIASLEKFLQERI++      L   VT AR +
Sbjct: 4  FVINYANPVKDKILDIASLEKFLQERIRLVLSVIPLMLLVTRARSR 49