Miyakogusa Predicted Gene

Lj5g3v1498040.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1498040.2 tr|G7I8Q5|G7I8Q5_MEDTR Pre-mRNA-splicing factor
SF2 OS=Medicago truncatula GN=MTR_1g083400 PE=4 SV=1,83.88,0,no
description,Nucleotide-binding, alpha-beta plait; SPLICING FACTOR,
ARGININE/SERINE-RICH,NULL; RNA,CUFF.55334.2
         (249 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g083400.1 | pre-mRNA-splicing factor SF2-like protein | HC...   290   8e-79
Medtr7g112760.1 | pre-mRNA-splicing factor SF2-like protein | HC...   282   2e-76
Medtr7g112760.2 | pre-mRNA-splicing factor SF2-like protein | HC...   282   2e-76
Medtr7g108810.1 | pre-mRNA-splicing factor SF2-like protein | HC...   252   2e-67
Medtr8g058530.1 | pre-mRNA-splicing factor SF2-like protein | HC...   251   3e-67
Medtr3g092580.1 | pre-mRNA-splicing factor SF2-like protein | HC...   225   3e-59
Medtr1g088180.1 | ASF/SF2-like pre-mRNA splicing factor SRP32, p...   209   2e-54
Medtr8g027190.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    53   3e-07
Medtr8g027190.2 | RNA-binding (RRM/RBD/RNP motif) family protein...    53   3e-07
Medtr8g032590.6 | RNA recognition motif, a.k.a. RRM, RBD protein...    50   3e-06
Medtr8g032590.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    50   3e-06
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c...    49   3e-06
Medtr1g101520.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    49   5e-06

>Medtr1g083400.1 | pre-mRNA-splicing factor SF2-like protein | HC |
           chr1:37124801-37119597 | 20130731
          Length = 290

 Score =  290 bits (742), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 141/186 (75%), Positives = 152/186 (81%)

Query: 1   MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
           MS RSSRT+YVGNLPGDIRLREVED+FYK+GPIVDIDLKIPP+PPGYAFV+FEDARDA+D
Sbjct: 32  MSGRSSRTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQD 91

Query: 61  AIYYRDGYDFDGFRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLPP 120
           AIYYRDGYDFDG+RL VELAH                               VLVTGLPP
Sbjct: 92  AIYYRDGYDFDGYRLLVELAHGGRGSSSSVDRYSRHSGRSGSRGVSRRSDYRVLVTGLPP 151

Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRA 180
           SASWQDLKDHMRKAG VCFSQVFRERGG+TGIVDYTNYDD+KYA+RKLDDSEFRNAFSR+
Sbjct: 152 SASWQDLKDHMRKAGHVCFSQVFRERGGLTGIVDYTNYDDVKYAIRKLDDSEFRNAFSRS 211

Query: 181 YIRVRE 186
           YIRVRE
Sbjct: 212 YIRVRE 217


>Medtr7g112760.1 | pre-mRNA-splicing factor SF2-like protein | HC |
           chr7:46405226-46398545 | 20130731
          Length = 292

 Score =  282 bits (722), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 143/186 (76%), Positives = 151/186 (81%), Gaps = 2/186 (1%)

Query: 1   MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
           MS RSSRTIYVGNLPGDIRLREVED+FYKFGPIVDI+LKIPPRPPGYAFV+FEDARDAED
Sbjct: 1   MSRRSSRTIYVGNLPGDIRLREVEDLFYKFGPIVDIELKIPPRPPGYAFVEFEDARDAED 60

Query: 61  AIYYRDGYDFDGFRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLPP 120
           AI YRDGY FDGFRLRVELAH                               VLVTGLPP
Sbjct: 61  AIRYRDGYKFDGFRLRVELAH--GGRGYSSSVDRYSSYSSGSRGVSKHSEYRVLVTGLPP 118

Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRA 180
           SASWQDLKDHMR+AGDVCFSQVFR+RGGMTGIV+YTNY+DMKYA+RKLDDSEFRNAFS A
Sbjct: 119 SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVEYTNYEDMKYAIRKLDDSEFRNAFSWA 178

Query: 181 YIRVRE 186
           YIRVRE
Sbjct: 179 YIRVRE 184


>Medtr7g112760.2 | pre-mRNA-splicing factor SF2-like protein | HC |
           chr7:46405206-46401029 | 20130731
          Length = 252

 Score =  282 bits (721), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 143/186 (76%), Positives = 151/186 (81%), Gaps = 2/186 (1%)

Query: 1   MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
           MS RSSRTIYVGNLPGDIRLREVED+FYKFGPIVDI+LKIPPRPPGYAFV+FEDARDAED
Sbjct: 1   MSRRSSRTIYVGNLPGDIRLREVEDLFYKFGPIVDIELKIPPRPPGYAFVEFEDARDAED 60

Query: 61  AIYYRDGYDFDGFRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLPP 120
           AI YRDGY FDGFRLRVELAH                               VLVTGLPP
Sbjct: 61  AIRYRDGYKFDGFRLRVELAH--GGRGYSSSVDRYSSYSSGSRGVSKHSEYRVLVTGLPP 118

Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRA 180
           SASWQDLKDHMR+AGDVCFSQVFR+RGGMTGIV+YTNY+DMKYA+RKLDDSEFRNAFS A
Sbjct: 119 SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVEYTNYEDMKYAIRKLDDSEFRNAFSWA 178

Query: 181 YIRVRE 186
           YIRVRE
Sbjct: 179 YIRVRE 184


>Medtr7g108810.1 | pre-mRNA-splicing factor SF2-like protein | HC |
           chr7:44331530-44321717 | 20130731
          Length = 401

 Score =  252 bits (643), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 124/186 (66%), Positives = 137/186 (73%)

Query: 1   MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
           MS  SSRT+YVGNLPGDIR REVED+F K+G I  IDLK+PPRPPGYAFV+FED +DAED
Sbjct: 102 MSRHSSRTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDVQDAED 161

Query: 61  AIYYRDGYDFDGFRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLPP 120
           AI  RDGYDFDG RLRVE AH                               V+V GLP 
Sbjct: 162 AIRGRDGYDFDGHRLRVEAAHGGRGNSSSRDRYSSHSNGRGGRGVSRRSEYRVIVNGLPS 221

Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRA 180
           SASWQDLKDHMRKAGDVCFSQVF +  G TGIVDYTNYDDMKYA++KLDDSEFRNAFS++
Sbjct: 222 SASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKS 281

Query: 181 YIRVRE 186
           Y+RVRE
Sbjct: 282 YVRVRE 287


>Medtr8g058530.1 | pre-mRNA-splicing factor SF2-like protein | HC |
           chr8:20148291-20144393 | 20130731
          Length = 303

 Score =  251 bits (642), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 124/186 (66%), Positives = 137/186 (73%)

Query: 1   MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
           MS  SSRT+YVGNLPGDIR REVED+F K+G I  IDLK+PPRPPGYAFV+FED +DAED
Sbjct: 1   MSRHSSRTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDVQDAED 60

Query: 61  AIYYRDGYDFDGFRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLPP 120
           AI  RDGYDFDG RLRVE AH                               V+V GLP 
Sbjct: 61  AIRGRDGYDFDGHRLRVEAAHGGRGNSSSRDRYSSHSNGRGGRGVSRRSEYRVIVNGLPS 120

Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRA 180
           SASWQDLKDHMRKAGDVCFSQVF +  G TGIVDYTNYDDMKYA++KLDDSEFRNAFS++
Sbjct: 121 SASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKS 180

Query: 181 YIRVRE 186
           Y+RVRE
Sbjct: 181 YVRVRE 186


>Medtr3g092580.1 | pre-mRNA-splicing factor SF2-like protein | HC |
           chr3:42306430-42301242 | 20130731
          Length = 380

 Score =  225 bits (573), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 115/198 (58%), Positives = 137/198 (69%), Gaps = 12/198 (6%)

Query: 1   MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
           MSSR SRTIYVGNLP DIR  E+ED+FYK+G I++I+LK+PPRPP Y FV+F++ARDAED
Sbjct: 108 MSSRFSRTIYVGNLPADIRESEIEDLFYKYGRIMEIELKVPPRPPCYCFVEFDNARDAED 167

Query: 61  AIYYRDGYDFDGFRLRVELAHXXXXXXXXXXXXXXXXXXXXXXX------------XXXX 108
           AI  RDGY+FDG RLRVELAH                                       
Sbjct: 168 AIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGRGGGGDSAGGGRFGVSRH 227

Query: 109 XXXXVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKL 168
               V+V GLP SASWQDLKDHMRKAGDVCF++V R+  G  G+VDYTNYDDMKYA+RKL
Sbjct: 228 SEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNYDDMKYAIRKL 287

Query: 169 DDSEFRNAFSRAYIRVRE 186
           DD+EFRN ++R+YIRVR+
Sbjct: 288 DDTEFRNPWARSYIRVRK 305


>Medtr1g088180.1 | ASF/SF2-like pre-mRNA splicing factor SRP32,
           putative | LC | chr1:39411452-39402479 | 20130731
          Length = 448

 Score =  209 bits (531), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 109/186 (58%), Positives = 123/186 (66%)

Query: 1   MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
           MS   SRT+YVGNLPGDIR REV+ +F K+G I  IDLK+PPRPP YAFV F+DA +A+D
Sbjct: 1   MSRHLSRTVYVGNLPGDIREREVKHLFMKYGHITRIDLKVPPRPPCYAFVVFKDALNADD 60

Query: 61  AIYYRDGYDFDGFRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLPP 120
           AI   DGYDFDG RLRVE AH                               VLV  LP 
Sbjct: 61  AICECDGYDFDGCRLRVEAAHVGYCNSSSRDRYSIHSNGQGGRGVSSHSEYRVLVNRLPS 120

Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRA 180
           SAS QDLKDHMRKAG VCFSQV  +    TGIVDYTN DDMKYA++ LD SEF+NAFSR+
Sbjct: 121 SASCQDLKDHMRKAGAVCFSQVVHDGRVTTGIVDYTNCDDMKYAIKNLDGSEFQNAFSRS 180

Query: 181 YIRVRE 186
           Y+ VRE
Sbjct: 181 YVHVRE 186


>Medtr8g027190.1 | RNA-binding (RRM/RBD/RNP motif) family protein
          | HC | chr8:9557166-9560056 | 20130731
          Length = 249

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 7/76 (9%)

Query: 7  RTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRD 66
          R ++ GNL  D R  E+E +F K+G I  +D+K      G+AFV +ED RDAE+AI   D
Sbjct: 2  RPVFAGNLEYDTRQSELERLFSKYGRIERVDMKS-----GFAFVYYEDERDAEEAIRALD 56

Query: 67 GYDF--DGFRLRVELA 80
             F  D  RL VE A
Sbjct: 57 NIPFGHDKRRLSVEWA 72


>Medtr8g027190.2 | RNA-binding (RRM/RBD/RNP motif) family protein
          | HC | chr8:9557166-9560056 | 20130731
          Length = 249

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 7/76 (9%)

Query: 7  RTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRD 66
          R ++ GNL  D R  E+E +F K+G I  +D+K      G+AFV +ED RDAE+AI   D
Sbjct: 2  RPVFAGNLEYDTRQSELERLFSKYGRIERVDMKS-----GFAFVYYEDERDAEEAIRALD 56

Query: 67 GYDF--DGFRLRVELA 80
             F  D  RL VE A
Sbjct: 57 NIPFGHDKRRLSVEWA 72


>Medtr8g032590.6 | RNA recognition motif, a.k.a. RRM, RBD protein
          | HC | chr8:12497703-12493893 | 20130731
          Length = 294

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 7/74 (9%)

Query: 7  RTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRD 66
          + I+ GNL  D R  +VE +F K+G I  +DLK      G+AF+  ED RDAE AI   D
Sbjct: 2  KPIFCGNLDFDARQSDVERLFRKYGKIDRVDLKS-----GFAFIYMEDERDAEYAIRRLD 56

Query: 67 GYDF--DGFRLRVE 78
            +F   G R+RVE
Sbjct: 57 QTEFGRKGRRIRVE 70


>Medtr8g032590.1 | RNA recognition motif, a.k.a. RRM, RBD protein
          | HC | chr8:12497703-12493893 | 20130731
          Length = 294

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 7/74 (9%)

Query: 7  RTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRD 66
          + I+ GNL  D R  +VE +F K+G I  +DLK      G+AF+  ED RDAE AI   D
Sbjct: 2  KPIFCGNLDFDARQSDVERLFRKYGKIDRVDLKS-----GFAFIYMEDERDAEYAIRRLD 56

Query: 67 GYDF--DGFRLRVE 78
            +F   G R+RVE
Sbjct: 57 QTEFGRKGRRIRVE 70


>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
           chr1:43879642-43873268 | 20130731
          Length = 572

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 7   RTIYVGNLPGDIRLREVEDIFYKFGPIVDIDL---KIPPRPPGYAFVQFEDARDAEDAIY 63
           RT++VGN+P D    ++++I  + GP++   L   +   +P GY F ++ D   A  A  
Sbjct: 29  RTVFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETALSARR 88

Query: 64  YRDGYDFDGFRLRVELA 80
              GY+ +G +LRV+ A
Sbjct: 89  NLQGYEINGRQLRVDFA 105


>Medtr1g101520.1 | RNA-binding (RRM/RBD/RNP motif) family protein
          | HC | chr1:45856698-45851996 | 20130731
          Length = 388

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 7/74 (9%)

Query: 7  RTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRD 66
          + I+ GN   D R  E+E +F ++G +  +D+K      G+AF+  ED RDAE AI   D
Sbjct: 2  KAIFCGNFEYDCRESELERLFRRYGKVDRVDMKA-----GFAFIYMEDERDAEAAIRALD 56

Query: 67 GYDF--DGFRLRVE 78
            +F   G RLRVE
Sbjct: 57 RIEFGRKGRRLRVE 70