Miyakogusa Predicted Gene

Lj5g3v1498020.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1498020.1 Non Characterized Hit- tr|C0PAR4|C0PAR4_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,45.26,1e-17,ZF_RING_2,Zinc finger, RING-type; RING/U-box,NULL;
Ring finger,Zinc finger, RING-type; no descriptio,CUFF.55344.1
         (309 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g083390.1 | DNA-binding protein, putative | HC | chr1:3710...   501   e-142
Medtr7g112740.1 | DNA-binding protein, putative | HC | chr7:4638...   388   e-108
Medtr7g112740.2 | DNA-binding protein, putative | HC | chr7:4638...   326   2e-89

>Medtr1g083390.1 | DNA-binding protein, putative | HC |
           chr1:37109750-37117337 | 20130731
          Length = 428

 Score =  501 bits (1290), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 239/283 (84%), Positives = 253/283 (89%), Gaps = 1/283 (0%)

Query: 27  SVSCSICLEVVADNGDRSWAKLHCGHQFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYAN 86
           SVSCSICLEVV DNGDRS+AKL CGHQFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYAN
Sbjct: 29  SVSCSICLEVVTDNGDRSFAKLLCGHQFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYAN 88

Query: 87  GGRSYPEFNMDDWTYDEDLYDLSYSELQSFGVHWCPFGNLARLPSPFEEGEFSQTAYHDM 146
           G RSYPEF+MDDWT+DEDLYDLSYSE+ SFGVHWCPFGN+ARLPS FEEGEFS  AY D+
Sbjct: 89  GSRSYPEFSMDDWTHDEDLYDLSYSEM-SFGVHWCPFGNMARLPSSFEEGEFSSIAYPDI 147

Query: 147 LGQHAIFAEHTAVSSGSHHCPYIAYVGPIHPSSSNSGGTVSEASNFNHWNGSSVPNDMPA 206
           +GQHA FAEHTAVSS SH CPY+AY GPIHPSSSNSGG VSEA NFNHWNGSSVP++MPA
Sbjct: 148 IGQHAAFAEHTAVSSASHPCPYVAYFGPIHPSSSNSGGAVSEAPNFNHWNGSSVPSEMPA 207

Query: 207 SFTFPAVDLHYHGWEHHSPPFSTASSRLVAADQPSVSPGNQRPVRGGSDVPRSGSFMHPF 266
           S+TFPAVDLHYH WEHH+PPFSTASSRLV ADQPSVSP +QRPVRGGSDVPRSGSFMHPF
Sbjct: 208 SYTFPAVDLHYHSWEHHTPPFSTASSRLVGADQPSVSPASQRPVRGGSDVPRSGSFMHPF 267

Query: 267 LVGHXXXXXXXXXXXXXLIPPYPGSNARARDRVQALQAYYQPQ 309
           LVGH             +IPPYPGSNARARDRVQALQAYYQPQ
Sbjct: 268 LVGHSSAARAGSSMGSSMIPPYPGSNARARDRVQALQAYYQPQ 310


>Medtr7g112740.1 | DNA-binding protein, putative | HC |
           chr7:46388896-46394836 | 20130731
          Length = 412

 Score =  388 bits (996), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/283 (71%), Positives = 225/283 (79%), Gaps = 4/283 (1%)

Query: 27  SVSCSICLEVVADNGDRSWAKLHCGHQFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYAN 86
           SV CSICLE+V+DNGDRS+AKL CGHQFHLDCIGSAFN KGAMQCPNCRKIEKGQWLYAN
Sbjct: 20  SVPCSICLEIVSDNGDRSFAKLQCGHQFHLDCIGSAFNAKGAMQCPNCRKIEKGQWLYAN 79

Query: 87  GGRSYPEFNMDDWTYDEDLYDLSYSELQSFGVHWCPFGNLARLPSPFEEGEFSQTAYHDM 146
           G RSYPEFNM+DWT D+D+YDLSYSE+ S GVHWCPFGN A+LPS FEE E+S   YHD 
Sbjct: 80  GSRSYPEFNMEDWTRDDDVYDLSYSEM-SLGVHWCPFGNFAQLPSSFEEREYSPIPYHDA 138

Query: 147 LGQHAIFAEHTAVSSGSHHCPYIAYVGPIHPSSSNSGGTVSEASNFNHWNGSSVPNDMPA 206
            G   +F EH+AVSSGSH CPYIAYVGP+HPS+SNSGGTVSE SNFNHWN   +  DM  
Sbjct: 139 PG--PMFTEHSAVSSGSHPCPYIAYVGPVHPSTSNSGGTVSEVSNFNHWNARPIHGDMST 196

Query: 207 SFTFPAVDLHYHGWEHHSPPFSTASSRLVAADQPSVSPGNQRPVRGGSDVPRSGSFMHPF 266
           S+T PAV LHYH W+HHS  FS+ SS L AADQPSVS  NQRP R GS+  RSGS+MHP+
Sbjct: 197 SYTVPAVVLHYHSWDHHSSHFSSGSSHLGAADQPSVSQSNQRPTR-GSEATRSGSYMHPY 255

Query: 267 LVGHXXXXXXXXXXXXXLIPPYPGSNARARDRVQALQAYYQPQ 309
            VGH             +IPPYPGSNARARDRV+ALQAYY  Q
Sbjct: 256 PVGHSSVARAGNSAASSMIPPYPGSNARARDRVEALQAYYHQQ 298


>Medtr7g112740.2 | DNA-binding protein, putative | HC |
           chr7:46388899-46394879 | 20130731
          Length = 386

 Score =  326 bits (836), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 180/283 (63%), Positives = 200/283 (70%), Gaps = 30/283 (10%)

Query: 27  SVSCSICLEVVADNGDRSWAKLHCGHQFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYAN 86
           SV CSICLE+V+DNGDRS+AKL CGHQFHLDCIGSAFN KGAMQCPNCRKIEKGQWLYAN
Sbjct: 20  SVPCSICLEIVSDNGDRSFAKLQCGHQFHLDCIGSAFNAKGAMQCPNCRKIEKGQWLYAN 79

Query: 87  GGRSYPEFNMDDWTYDEDLYDLSYSELQSFGVHWCPFGNLARLPSPFEEGEFSQTAYHDM 146
           G RSYPEFNM+DWT D+D+YDLSYSE+ S GVHWCPFGN A+LPS FEE E+S   YHD 
Sbjct: 80  GSRSYPEFNMEDWTRDDDVYDLSYSEM-SLGVHWCPFGNFAQLPSSFEEREYSPIPYHDA 138

Query: 147 LGQHAIFAEHTAVSSGSHHCPYIAYVGPIHPSSSNSGGTVSEASNFNHWNGSSVPNDMPA 206
            G   +F EH+AVS                          SE SNFNHWN   +  DM  
Sbjct: 139 PG--PMFTEHSAVS--------------------------SEVSNFNHWNARPIHGDMST 170

Query: 207 SFTFPAVDLHYHGWEHHSPPFSTASSRLVAADQPSVSPGNQRPVRGGSDVPRSGSFMHPF 266
           S+T PAV LHYH W+HHS  FS+ SS L AADQPSVS  NQRP R GS+  RSGS+MHP+
Sbjct: 171 SYTVPAVVLHYHSWDHHSSHFSSGSSHLGAADQPSVSQSNQRPTR-GSEATRSGSYMHPY 229

Query: 267 LVGHXXXXXXXXXXXXXLIPPYPGSNARARDRVQALQAYYQPQ 309
            VGH             +IPPYPGSNARARDRV+ALQAYY  Q
Sbjct: 230 PVGHSSVARAGNSAASSMIPPYPGSNARARDRVEALQAYYHQQ 272