Miyakogusa Predicted Gene

Lj5g3v1495690.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1495690.2 tr|B3H5I5|B3H5I5_ARATH Ubiquitin family protein
OS=Arabidopsis thaliana GN=At5g57860 PE=4
SV=1,65.15,1e-17,Ubiquitin-like,NULL; AT7SL-1 (ARABIDOPSIS 7SL RNA
1),NULL; UBIQUITIN,NULL; ubiquitin,Ubiquitin; UBIQ,CUFF.55311.2
         (103 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g046160.1 | ubiquitin family protein | HC | chr2:20243415-...   167   2e-42
Medtr1g046640.1 | seven in absentia family protein | LC | chr1:1...    49   1e-06
Medtr2g105410.1 | DNA repair protein RAD23-1, putative | HC | ch...    47   3e-06

>Medtr2g046160.1 | ubiquitin family protein | HC |
           chr2:20243415-20240118 | 20130731
          Length = 103

 Score =  167 bits (423), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 77/103 (74%), Positives = 92/103 (89%)

Query: 1   MDMYIRVKRKMTTYFIRCKPSDKILDVKQKLEELVDQPANNQQLILHGTGEVLEDAKTLA 60
           MDMYIR+KR  TTYFIRCK SDKILD+K+KL+ELVD+PA +Q+LIL GTGEVL+D+KTLA
Sbjct: 1   MDMYIRIKRDKTTYFIRCKASDKILDIKEKLQELVDKPAKDQRLILPGTGEVLDDSKTLA 60

Query: 61  DQKVENDAVVALALRKDDNEFEEVNIVRPSEFYPAREGDAANW 103
           DQK++ DAVVAL LRKDDNEFEEVNIVRPS+FY  R+ + A+W
Sbjct: 61  DQKIDTDAVVALTLRKDDNEFEEVNIVRPSDFYQTRDAEGASW 103


>Medtr1g046640.1 | seven in absentia family protein | LC |
           chr1:17581455-17584027 | 20130731
          Length = 315

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 3/75 (4%)

Query: 1   MDMYIRVKRKMTTYFIRCKPSDKILDVKQKLEELVDQPANNQQLILHGTGEVLEDAKTLA 60
           M +YIR +    TY +R + SD I++VK+K+ +  D   + Q+LI    G+ LED +TLA
Sbjct: 240 MQIYIRTQTG-KTYPLRVESSDTIMNVKKKILDKEDIAVHQQRLIF--DGKQLEDNRTLA 296

Query: 61  DQKVENDAVVALALR 75
           D  ++  + + L LR
Sbjct: 297 DYNIQEKSTIHLCLR 311


>Medtr2g105410.1 | DNA repair protein RAD23-1, putative | HC |
          chr2:45450877-45445798 | 20130731
          Length = 366

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 4/77 (5%)

Query: 3  MYIRVKRKMTTYF-IRCKPSDKILDVKQKLEELV--DQPANNQQLILHGTGEVLEDAKTL 59
          M + VK    ++F IR  PSD I+ VK+ +E++   D     QQL++H  G+VL+D  TL
Sbjct: 1  MKLTVKTLKGSHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIH-NGKVLKDETTL 59

Query: 60 ADQKVENDAVVALALRK 76
          AD KV  D  + + L K
Sbjct: 60 ADNKVSEDGFLVVMLSK 76