Miyakogusa Predicted Gene

Lj5g3v1494610.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1494610.1 Non Characterized Hit- tr|I3TA49|I3TA49_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,SERYL-TRNA
SYNTHETASE,Serine-tRNA ligase, type1; tRNA-synt_2b,Aminoacyl-tRNA
synthetase, class II (G,CUFF.55350.1
         (141 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g082850.1 | seryl-tRNA synthetase/serine-tRNA ligase | HC ...   270   3e-73
Medtr7g029025.1 | seryl-tRNA synthetase/serine-tRNA ligase, puta...   179   7e-46
Medtr3g099470.1 | seryl-tRNA synthetase/serine-tRNA ligase | HC ...   122   1e-28

>Medtr1g082850.1 | seryl-tRNA synthetase/serine-tRNA ligase | HC |
           chr1:36859354-36864494 | 20130731
          Length = 447

 Score =  270 bits (690), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 127/143 (88%), Positives = 136/143 (95%), Gaps = 2/143 (1%)

Query: 1   MHEEMLKNSEDFYKELNIPYRVVSIVSGALNDAAAKKYDLEAWFPASQAYRELVSCSNCT 60
           MHEEMLKNSEDFYK LNIPY++VSIVSGALNDAAAKKYDLEAWFPAS+ YRELVSCSNCT
Sbjct: 304 MHEEMLKNSEDFYKALNIPYQIVSIVSGALNDAAAKKYDLEAWFPASKTYRELVSCSNCT 363

Query: 61  DYQARRLEIRYGQRKSNEQLKQYVHLLNSTLTATERTICCILENNQKDDGVEIPEALRPY 120
           DYQAR+LEIRYGQ+KSNEQLKQYVHLLNSTLTATERTICCILENNQ +DGVEIPE LRP+
Sbjct: 364 DYQARKLEIRYGQKKSNEQLKQYVHLLNSTLTATERTICCILENNQNEDGVEIPEVLRPF 423

Query: 121 MGGKSFIPFKNQP--EAKGKKSK 141
           M GK+F+PFKNQP  EAKGKKSK
Sbjct: 424 MFGKTFLPFKNQPNNEAKGKKSK 446


>Medtr7g029025.1 | seryl-tRNA synthetase/serine-tRNA ligase,
           putative | LC | chr7:10084902-10086127 | 20130731
          Length = 298

 Score =  179 bits (454), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 93/139 (66%), Positives = 106/139 (76%), Gaps = 24/139 (17%)

Query: 2   HEEMLKNSEDFYKELNIPYRVVSIVSGALNDAAAKKYDLEAWFPASQAYRELVSCSNCTD 61
           HEEMLK +E FY+ LNIPY++VSIVSGALN AAAKKY                      D
Sbjct: 140 HEEMLKKAEHFYEALNIPYQIVSIVSGALNSAAAKKYH---------------------D 178

Query: 62  YQARRLEIRYGQ-RKSNEQLKQYVHLLNSTLTATERTICCILENNQKDDGVEIPEALRPY 120
           YQAR+LEIRYGQ +KS+E LKQYVHLLNSTLTAT+RTICCILENNQK+DGV I + LRP+
Sbjct: 179 YQARKLEIRYGQTKKSSELLKQYVHLLNSTLTATQRTICCILENNQKEDGVVILKVLRPF 238

Query: 121 MGGKSFIPFKNQP--EAKG 137
           MGGK+F+PFKNQP  EAKG
Sbjct: 239 MGGKTFLPFKNQPNKEAKG 257


>Medtr3g099470.1 | seryl-tRNA synthetase/serine-tRNA ligase | HC |
           chr3:45589841-45593917 | 20130731
          Length = 546

 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/137 (45%), Positives = 84/137 (61%), Gaps = 11/137 (8%)

Query: 2   HEEMLKNSEDFYKELNIPYRVVSIVSGALNDAAAKKYDLEAWFPASQAYRELVSCSNCTD 61
           HEE++K  ED +  L + ++ + + S  L   A +K+D+EAW P  + + E+ S SNCTD
Sbjct: 406 HEELIKIEEDMFSSLGLHFKTLDMASEDLGAPAYRKFDVEAWMPGLERFGEISSASNCTD 465

Query: 62  YQARRLEIRY--------GQRKSNEQLK--QYVHLLNSTLTATERTICCILENNQKDDG- 110
           YQ+RRL IRY        G +KS   L   Q+VH LN+T  A  R I C+LEN Q++DG 
Sbjct: 466 YQSRRLGIRYRPSEVLVPGPKKSKGNLAPPQFVHTLNATACAVPRMIICLLENYQQEDGS 525

Query: 111 VEIPEALRPYMGGKSFI 127
           V IPE LRP+MGG   I
Sbjct: 526 VLIPEPLRPFMGGLDII 542