Miyakogusa Predicted Gene

Lj5g3v1473470.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1473470.1 Non Characterized Hit- tr|I3SQH5|I3SQH5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,no
description,Histone-fold; Histone-fold,Histone-fold;
CBFD_NFYB_HMF,Transcription factor CBF/NF-Y/,CUFF.55290.1
         (260 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g113680.1 | nuclear transcription factor Y protein | HC | ...   360   e-100
Medtr1g082660.1 | nuclear transcription factor Y protein | HC | ...   303   8e-83
Medtr1g082660.2 | nuclear transcription factor Y protein | HC | ...   303   8e-83
Medtr3g099180.2 | nuclear transcription factor Y protein | HC | ...   183   1e-46
Medtr3g099180.1 | nuclear transcription factor Y protein | HC | ...   183   2e-46
Medtr2g023340.1 | core histone H2A/H2B/H3/H4 | LC | chr2:8235750...   144   6e-35
Medtr2g081600.1 | nuclear transcription factor Y protein | HC | ...   112   4e-25
Medtr2g081630.1 | nuclear transcription factor Y protein | HC | ...   110   1e-24
Medtr3g012030.2 | negative cofactor 2 transcriptional co-repress...    64   2e-10
Medtr8g041420.1 | negative cofactor 2 transcriptional co-repress...    63   3e-10
Medtr5g088760.2 | negative cofactor 2 transcriptional co-repress...    57   2e-08
Medtr5g088760.3 | negative cofactor 2 transcriptional co-repress...    55   5e-08
Medtr3g085430.1 | nuclear transcription factor Y protein | HC | ...    52   6e-07
Medtr4g059710.1 | core histone H2A/H2B/H3/H4 | HC | chr4:2202907...    49   6e-06

>Medtr7g113680.1 | nuclear transcription factor Y protein | HC |
           chr7:46853507-46850661 | 20130731
          Length = 311

 Score =  360 bits (924), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 181/260 (69%), Positives = 191/260 (73%)

Query: 1   MDHQGHGQNPSMGVGGSGPQMTYGSNPYLQNPLTGPPGMVVSSAGNVQSTGQPVGTQMGH 60
           MDHQGH QNP MGV GSG QM YGSNPY  N +TG PG VV+S G +QSTGQP G Q+G 
Sbjct: 52  MDHQGHNQNPQMGVVGSGSQMPYGSNPYQSNQMTGAPGSVVTSVGGMQSTGQPAGAQLGQ 111

Query: 61  PXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIDKVSDFKNHSLPLARIKKIMKADEDVRMI 120
                                        EI+KV+DFKNHSLPLARIKKIMKADEDVRMI
Sbjct: 112 HQLAYQHIHQQQQQQLQQQLQSFWSNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMI 171

Query: 121 SAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRE 180
           SAEAPV+FARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRE
Sbjct: 172 SAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRE 231

Query: 181 DLKDEVLXXXXXXXXXXXXXXXXLPYCYMPPQHAQQVGPGGVMMHKPVMDPNMYAMQPDP 240
           DLKDEVL                LPYCYMPPQHA QVG  GV+M KPVMDPNMYA QP P
Sbjct: 232 DLKDEVLASIPRGTMPVAGPADALPYCYMPPQHASQVGTAGVIMGKPVMDPNMYAQQPHP 291

Query: 241 FMAPQMWLQPPEQQQSSPDH 260
           +MAPQMW QPPEQ+  SPDH
Sbjct: 292 YMAPQMWPQPPEQRPPSPDH 311


>Medtr1g082660.1 | nuclear transcription factor Y protein | HC |
           chr1:36798252-36800703 | 20130731
          Length = 256

 Score =  303 bits (777), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 160/243 (65%), Positives = 172/243 (70%), Gaps = 4/243 (1%)

Query: 1   MDHQGHGQNPSMGVGGSGPQMTYGSNPYLQNPLTGPPGMVVSSAGNVQSTGQPVGTQMGH 60
           MDHQGHGQNP+MGV GSG    YGSNPY  NP+TG PGMVV S G +Q  GQP GTQ+G 
Sbjct: 1   MDHQGHGQNPNMGVVGSGQMAPYGSNPYQPNPMTGSPGMVVPSVGTIQPGGQPDGTQLGQ 60

Query: 61  PXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIDKVSDFKNHSLPLARIKKIMKADEDVRMI 120
                                        EI+KV+DFKNHSLPLARIKKIMKADEDV+MI
Sbjct: 61  HQLAYQHIHQQQQQQQQQQLQTFWGNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVKMI 120

Query: 121 SAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRE 180
           SAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAIT TDIFDFLVDIVPRE
Sbjct: 121 SAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITGTDIFDFLVDIVPRE 180

Query: 181 DLKDEVLXXXXXXXXXXXXXXXXLPYCYMPPQHAQQVGPGGVMMHKPVMDPNMYAMQPDP 240
           DLKDEVL                +PYCYMPPQ+AQQ G  G+MMH    +PNMYA Q  P
Sbjct: 181 DLKDEVLASIPRGPMPVGGPADGIPYCYMPPQNAQQAGNPGLMMH----NPNMYAPQSHP 236

Query: 241 FMA 243
           +MA
Sbjct: 237 YMA 239


>Medtr1g082660.2 | nuclear transcription factor Y protein | HC |
           chr1:36798518-36800703 | 20130731
          Length = 256

 Score =  303 bits (777), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 160/243 (65%), Positives = 172/243 (70%), Gaps = 4/243 (1%)

Query: 1   MDHQGHGQNPSMGVGGSGPQMTYGSNPYLQNPLTGPPGMVVSSAGNVQSTGQPVGTQMGH 60
           MDHQGHGQNP+MGV GSG    YGSNPY  NP+TG PGMVV S G +Q  GQP GTQ+G 
Sbjct: 1   MDHQGHGQNPNMGVVGSGQMAPYGSNPYQPNPMTGSPGMVVPSVGTIQPGGQPDGTQLGQ 60

Query: 61  PXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIDKVSDFKNHSLPLARIKKIMKADEDVRMI 120
                                        EI+KV+DFKNHSLPLARIKKIMKADEDV+MI
Sbjct: 61  HQLAYQHIHQQQQQQQQQQLQTFWGNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVKMI 120

Query: 121 SAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRE 180
           SAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAIT TDIFDFLVDIVPRE
Sbjct: 121 SAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITGTDIFDFLVDIVPRE 180

Query: 181 DLKDEVLXXXXXXXXXXXXXXXXLPYCYMPPQHAQQVGPGGVMMHKPVMDPNMYAMQPDP 240
           DLKDEVL                +PYCYMPPQ+AQQ G  G+MMH    +PNMYA Q  P
Sbjct: 181 DLKDEVLASIPRGPMPVGGPADGIPYCYMPPQNAQQAGNPGLMMH----NPNMYAPQSHP 236

Query: 241 FMA 243
           +MA
Sbjct: 237 YMA 239


>Medtr3g099180.2 | nuclear transcription factor Y protein | HC |
           chr3:45466714-45470003 | 20130731
          Length = 218

 Score =  183 bits (464), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 99/168 (58%), Positives = 117/168 (69%), Gaps = 22/168 (13%)

Query: 90  EIDKVSDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEE 149
           EI+ V+DFKNH LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FILELT+RSW H EE
Sbjct: 44  EIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEE 103

Query: 150 NKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLXXXXXXXXXXXXXXXXLPYCYM 209
           NKRRTLQKNDIAAAITRTDIFDFLVDIVPR+++KDE                  +PY Y 
Sbjct: 104 NKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEGA------AAIVGAAASGVPY-YY 156

Query: 210 PPQHAQQVGPGGVMMHKPVMDPNMYAMQPDPFMAPQMWLQPPEQQQSS 257
           PP       P G+M+ +P +DP           A  +++QPP Q   S
Sbjct: 157 PPMGQ----PAGMMIGRPAVDP-----------ATGVYVQPPSQAWQS 189


>Medtr3g099180.1 | nuclear transcription factor Y protein | HC |
           chr3:45466751-45470003 | 20130731
          Length = 217

 Score =  183 bits (464), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 99/168 (58%), Positives = 117/168 (69%), Gaps = 22/168 (13%)

Query: 90  EIDKVSDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEE 149
           EI+ V+DFKNH LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FILELT+RSW H EE
Sbjct: 44  EIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEE 103

Query: 150 NKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLXXXXXXXXXXXXXXXXLPYCYM 209
           NKRRTLQKNDIAAAITRTDIFDFLVDIVPR+++KDE                  +PY Y 
Sbjct: 104 NKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEGA------AAIVGAAASGVPY-YY 156

Query: 210 PPQHAQQVGPGGVMMHKPVMDPNMYAMQPDPFMAPQMWLQPPEQQQSS 257
           PP       P G+M+ +P +DP           A  +++QPP Q   S
Sbjct: 157 PPMGQ----PAGMMIGRPAVDP-----------ATGVYVQPPSQAWQS 189


>Medtr2g023340.1 | core histone H2A/H2B/H3/H4 | LC |
           chr2:8235750-8235016 | 20130731
          Length = 244

 Score =  144 bits (364), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 73/142 (51%), Positives = 99/142 (69%), Gaps = 14/142 (9%)

Query: 90  EIDKVSDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEE 149
           E++KV DF+N+ LPLARIKKIMKA+E V MISAEAP++FA+ACEMFI+EL  RSW + E 
Sbjct: 74  EVEKVVDFRNNGLPLARIKKIMKAEEGVSMISAEAPILFAKACEMFIMELATRSWANAEV 133

Query: 150 NKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLXXXXXXXXXXXXXXXXLPY--- 206
           NKR+TLQK+DIA+A++  ++FDFLVDIVPRE+  +  +                +PY   
Sbjct: 134 NKRKTLQKSDIASAVSSNEVFDFLVDIVPRENTMERDI-------FMGIPRRENVPYYLP 186

Query: 207 --CYMPPQHAQ--QVGPGGVMM 224
              ++PPQ+A     GP G++M
Sbjct: 187 MPVHVPPQYAAGPSYGPAGMLM 208


>Medtr2g081600.1 | nuclear transcription factor Y protein | HC |
           chr2:34243690-34243268 | 20130731
          Length = 119

 Score =  112 bits (279), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 66/87 (75%), Gaps = 1/87 (1%)

Query: 100 HSLPLARIKKIMK-ADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 158
           HSLPLARIKKIMK + EDV+MIS  AP+VF++ACE+FI ELT RSW    + KRRTL K 
Sbjct: 21  HSLPLARIKKIMKNSSEDVKMISGVAPIVFSKACELFIEELTRRSWIMAIDAKRRTLNKE 80

Query: 159 DIAAAITRTDIFDFLVDIVPREDLKDE 185
           D+A+A+  TDIFDFL+ +V   D  D+
Sbjct: 81  DVASAVIATDIFDFLITLVSNSDSTDD 107


>Medtr2g081630.1 | nuclear transcription factor Y protein | HC |
           chr2:34260235-34259869 | 20130731
          Length = 117

 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 64/83 (77%), Gaps = 1/83 (1%)

Query: 100 HSLPLARIKKIMK-ADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 158
           HSLPLARIKKIMK + EDV+MIS  AP+VF++ACE+FI ELT RSW    + KRRTL K 
Sbjct: 21  HSLPLARIKKIMKNSSEDVKMISGVAPIVFSKACELFIEELTRRSWIMAIDAKRRTLNKE 80

Query: 159 DIAAAITRTDIFDFLVDIVPRED 181
           D+A+A+  TDIFDFL+ +V   D
Sbjct: 81  DVASAVIATDIFDFLITLVSNSD 103


>Medtr3g012030.2 | negative cofactor 2 transcriptional co-repressor,
           putative | HC | chr3:3186291-3181373 | 20130731
          Length = 292

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 48/78 (61%)

Query: 102 LPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIA 161
            P ARIKKIM+ADEDV  I+   PV+ ++A E+F+ +L  R++  T +   +T+    + 
Sbjct: 9   FPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLK 68

Query: 162 AAITRTDIFDFLVDIVPR 179
             +   ++FDFL DIV R
Sbjct: 69  HCVQSYNVFDFLRDIVSR 86


>Medtr8g041420.1 | negative cofactor 2 transcriptional co-repressor,
           putative | HC | chr8:15595067-15590978 | 20130731
          Length = 305

 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 48/78 (61%)

Query: 102 LPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIA 161
            P ARIKKIM+ADEDV  I+   PV+ ++A E+F+ +L  R++  T +   +T+    + 
Sbjct: 9   FPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLK 68

Query: 162 AAITRTDIFDFLVDIVPR 179
             +   ++FDFL D+V +
Sbjct: 69  HCVQSYNVFDFLKDVVSK 86


>Medtr5g088760.2 | negative cofactor 2 transcriptional co-repressor,
           putative | HC | chr5:38540164-38543606 | 20130731
          Length = 302

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query: 102 LPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIA 161
            P ARIKKIM+ADED+  I+   P++ ++A E+F+ +L  R++  T     +T+    + 
Sbjct: 9   FPAARIKKIMQADEDIGKIALAVPLLVSKALELFLQDLCDRTYEITLGRGAKTVNAFHLK 68

Query: 162 AAITRTDIFDFLVDIVPR 179
             I   ++FDFL D V +
Sbjct: 69  QCIQTCNVFDFLKDTVSK 86


>Medtr5g088760.3 | negative cofactor 2 transcriptional co-repressor,
           putative | HC | chr5:38540164-38543606 | 20130731
          Length = 293

 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 45/75 (60%)

Query: 105 ARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAI 164
           ARIKKIM+ADED+  I+   P++ ++A E+F+ +L  R++  T     +T+    +   I
Sbjct: 3   ARIKKIMQADEDIGKIALAVPLLVSKALELFLQDLCDRTYEITLGRGAKTVNAFHLKQCI 62

Query: 165 TRTDIFDFLVDIVPR 179
              ++FDFL D V +
Sbjct: 63  QTCNVFDFLKDTVSK 77


>Medtr3g085430.1 | nuclear transcription factor Y protein | HC |
           chr3:38611793-38612780 | 20130731
          Length = 173

 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 102 LPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIA 161
            P +R+KKI+  D+DV+ +S+EA  + +R+ E+F+  L  +S     E KR+T++   + 
Sbjct: 32  FPKSRVKKIITLDKDVKRVSSEALFLVSRSTELFLQLLAEKSAEVAIEKKRKTVKLEHMR 91

Query: 162 AAITRTD-IFDFLVDIVP 178
            A+ R   I DFL+D +P
Sbjct: 92  IAVKRNRPISDFLLDSLP 109


>Medtr4g059710.1 | core histone H2A/H2B/H3/H4 | HC |
           chr4:22029079-22032364 | 20130731
          Length = 179

 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 92  DKVSDFKNHSLPLARIKKIMKAD-EDVRMISAEAPVVFARACEMFILELTLRSWNHTEEN 150
           D+  D K H  P+ RI+ ++K +  D+R +S EA +    A E F+ +L   ++    ++
Sbjct: 73  DEEEDAKTHVFPMNRIRTMLKGEISDLR-VSQEAILAINNAAEKFLEQLAEDAYGCCAQD 131

Query: 151 KRRTLQKNDIAAAITRTDIFDFLVDIVP 178
           ++++L  N ++  +++   +DFL D VP
Sbjct: 132 RKKSLSYNHLSRVVSKQKRYDFLSDFVP 159