Miyakogusa Predicted Gene

Lj5g3v1463440.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1463440.1 Non Characterized Hit- tr|C5WVC6|C5WVC6_SORBI
Putative uncharacterized protein Sb01g016980
OS=Sorghu,41.96,4e-19,seg,NULL,gene.g61759.t1.1
         (139 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g082570.1 | DNA excision repair protein ERCC-1 | HC | chr1...   169   5e-43

>Medtr1g082570.1 | DNA excision repair protein ERCC-1 | HC |
           chr1:36743010-36747217 | 20130731
          Length = 401

 Score =  169 bits (429), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 91/142 (64%), Positives = 101/142 (71%), Gaps = 25/142 (17%)

Query: 1   MDTDYLSRLTHALTTVRHVNKTDVVTLGTTFG-----------------------VKRLF 37
           MDTDYLSRLTHALTTVRHVNKTDVVTLGT FG                       VKRLF
Sbjct: 237 MDTDYLSRLTHALTTVRHVNKTDVVTLGTNFGSLSNIMGASMEDLARCPGIGERKVKRLF 296

Query: 38  DTFHEPFKRVESSRQAVPETSAQNKPASPDPLMRNNAESSSLIKD--KDVEDVSKRRKEE 95
           DTFHEPFKRVESSRQA+PETS QN+P S D  + NN ESSS ++D  KD +  SKR+K+E
Sbjct: 297 DTFHEPFKRVESSRQAIPETSVQNQPTSQDTSVINNTESSSSLEDIHKDADSASKRKKKE 356

Query: 96  PELTVKSALSAAFAKYSDRVGK 117
           PE TV+SALS AFAK S+R GK
Sbjct: 357 PEFTVRSALSVAFAKLSERAGK 378