Miyakogusa Predicted Gene

Lj5g3v1452230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1452230.1 tr|C1EBR6|C1EBR6_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_61164
,32.58,0.000000000007,Mog1p/PsbP-like,Mog1/PsbP/DUF1795,
alpha/beta/alpha sandwich; no description,Mog1/PsbP,
alpha/beta/a,CUFF.55272.1
         (241 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g082430.1 | Mog1/PsbP/DUF1795-like photosystem II reaction...   291   5e-79

>Medtr1g082430.1 | Mog1/PsbP/DUF1795-like photosystem II reaction
           center PsbP family protein | HC | chr1:36642633-36645890
           | 20130731
          Length = 248

 Score =  291 bits (744), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 155/253 (61%), Positives = 186/253 (73%), Gaps = 17/253 (6%)

Query: 1   MAILLSNL------AISNPKPFFSITSKPITCATNLT----SKRNLLLQTSLLCV--TIG 48
           MAILLS L      A +N K F  I+  PI   ++L      +RNL+LQTSLLC      
Sbjct: 1   MAILLSTLFPKLGIANTNTKSFI-ISKVPIIICSSLNPSTLKRRNLILQTSLLCCFGISS 59

Query: 49  LSPQLPAALSSPQNPPSKSLLSSIENTKSWYQFSGDGFAIRVPPEFEDITEPEDLNAGLT 108
           L+ QLP ALSS  N    SLLS+IENT SWY+F GDGFAIRVPPEF+D+ EPED +AG+ 
Sbjct: 60  LTLQLPPALSSEPN----SLLSTIENTSSWYRFYGDGFAIRVPPEFQDVMEPEDFSAGMN 115

Query: 109 LYGDRAKTPPFAAQFASSDRNEVLSVVTKPTNQLKITFLEAKDITDLGSLREAAKIFVPG 168
           LYGDRAK     A+F SSD   VL+V+T+ T+QLK+TFLEA+DIT L SL++AAK+F+PG
Sbjct: 116 LYGDRAKEKEVVARFVSSDGLAVLNVITRVTSQLKLTFLEAQDITGLASLKDAAKLFIPG 175

Query: 169 EASLYSARAIKVKEVDGFRNYYFYEFGNDQLHIALMAGVSGGKAIIAGATASQSKWDIDG 228
            + +YSAR+IK+KE  GFR YYFYEFG D LH+ALMAGV GGK IIAGATA QSKWD DG
Sbjct: 176 GSKVYSARSIKIKEPGGFRTYYFYEFGKDDLHLALMAGVRGGKVIIAGATAPQSKWDTDG 235

Query: 229 VRLRSAAVSLKIL 241
           V LRSAA+SL I+
Sbjct: 236 VTLRSAAISLTIV 248