Miyakogusa Predicted Gene

Lj5g3v1452220.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1452220.1 tr|I4H6M4|I4H6M4_MICAE Similar to
tr|P74145|P74145 OS=Microcystis aeruginosa PCC 9807
GN=MICAF_30700,33.51,7e-19,Repair_PSII,TPM domain;
seg,NULL,CUFF.55273.1
         (298 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g082420.1 | thylakoid lumen 18.3 kDa protein | HC | chr1:3...   409   e-114
Medtr1g082420.2 | thylakoid lumen 18.3 kDa protein | HC | chr1:3...   284   7e-77

>Medtr1g082420.1 | thylakoid lumen 18.3 kDa protein | HC |
           chr1:36642434-36640029 | 20130731
          Length = 289

 Score =  409 bits (1052), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/298 (72%), Positives = 243/298 (81%), Gaps = 9/298 (3%)

Query: 1   MGTIFPPHMTLPPLSSIKXXXXXXXXXXXXXXXXXXXXFCSRPIISSLRKNQTLSLKPSL 60
           M T+FPP+ +L PL ++K                       +PI+S+L+K QTLSLKP  
Sbjct: 1   MTTLFPPN-SLSPLLNLKSSPSLQPKSTSL--------ISYKPIVSNLKKTQTLSLKPPT 51

Query: 61  ASSGTSWLSHAQQGLAALAITLALNFSPIFLSGNALASEFDVLNEVPAKDSYVVDDAGVL 120
             S T+ L+HAQQGLAALAITLALNFSP+ LSGNA ASEFDV+NE P K++YVVDDAGVL
Sbjct: 52  LPSCTTLLTHAQQGLAALAITLALNFSPLLLSGNAFASEFDVINERPPKEAYVVDDAGVL 111

Query: 121 SRVTRSDLKGLLSDLESRKKFHINFITVRKLTSKADAFEYADQVLERWYPSVEEGNDKGI 180
           SRVT+SDLK LL+DLESRK FHINFIT+RKLTSKADAFE+ADQ+LERWYPSVEEGNDKG+
Sbjct: 112 SRVTKSDLKRLLADLESRKNFHINFITLRKLTSKADAFEFADQILERWYPSVEEGNDKGV 171

Query: 181 VVLVTSQKEGAVTGGPAFVQAVGENILDATVAENLPVLATDEKYNEAVLSTAKRLVAAID 240
           VVLVTSQKEGAVTGGPAFVQAVGENILDATV+ENLPVLATDEKYNEA+ STAKRLVAAID
Sbjct: 172 VVLVTSQKEGAVTGGPAFVQAVGENILDATVSENLPVLATDEKYNEAIYSTAKRLVAAID 231

Query: 241 GLPDPGGPQVKDNKRESNFRTKEETEQKRGQFSXXXXXXXXXXXXXPMLQYYAYVAKK 298
           GLPDPGGP VKD+KRESNF+TKEETE+KRGQFS             PM+QYYAYVAKK
Sbjct: 232 GLPDPGGPSVKDDKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMVQYYAYVAKK 289


>Medtr1g082420.2 | thylakoid lumen 18.3 kDa protein | HC |
           chr1:36642434-36640029 | 20130731
          Length = 210

 Score =  284 bits (726), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 154/216 (71%), Positives = 176/216 (81%), Gaps = 9/216 (4%)

Query: 1   MGTIFPPHMTLPPLSSIKXXXXXXXXXXXXXXXXXXXXFCSRPIISSLRKNQTLSLKPSL 60
           M T+FPP+ +L PL ++K                       +PI+S+L+K QTLSLKP  
Sbjct: 1   MTTLFPPN-SLSPLLNLKSSPSLQPKSTSL--------ISYKPIVSNLKKTQTLSLKPPT 51

Query: 61  ASSGTSWLSHAQQGLAALAITLALNFSPIFLSGNALASEFDVLNEVPAKDSYVVDDAGVL 120
             S T+ L+HAQQGLAALAITLALNFSP+ LSGNA ASEFDV+NE P K++YVVDDAGVL
Sbjct: 52  LPSCTTLLTHAQQGLAALAITLALNFSPLLLSGNAFASEFDVINERPPKEAYVVDDAGVL 111

Query: 121 SRVTRSDLKGLLSDLESRKKFHINFITVRKLTSKADAFEYADQVLERWYPSVEEGNDKGI 180
           SRVT+SDLK LL+DLESRK FHINFIT+RKLTSKADAFE+ADQ+LERWYPSVEEGNDKG+
Sbjct: 112 SRVTKSDLKRLLADLESRKNFHINFITLRKLTSKADAFEFADQILERWYPSVEEGNDKGV 171

Query: 181 VVLVTSQKEGAVTGGPAFVQAVGENILDATVAENLP 216
           VVLVTSQKEGAVTGGPAFVQAVGENILDATV+ENLP
Sbjct: 172 VVLVTSQKEGAVTGGPAFVQAVGENILDATVSENLP 207