Miyakogusa Predicted Gene

Lj5g3v1452200.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1452200.1 Non Characterized Hit- tr|D8UAB3|D8UAB3_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,35.29,0.000000000001,no description,Membrane transporter,
Tim44-related/Ribosomal protein L45; Tim44,Membrane
transporter,CUFF.55271.1
         (305 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g082380.1 | protein translocase family protein | HC | chr1...   420   e-118
Medtr1g082380.2 | protein translocase family protein | HC | chr1...   329   2e-90

>Medtr1g082380.1 | protein translocase family protein | HC |
           chr1:36629502-36623273 | 20130731
          Length = 294

 Score =  420 bits (1080), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/306 (67%), Positives = 244/306 (79%), Gaps = 14/306 (4%)

Query: 2   MPLKRFHAVRTLYRSSQIGQDSSSYLLGSCRSYSNALSNGSEGNFKSFHSHLFKGHDGFP 61
           M LKR  + R LY SSQI     S+LLGS R+YSNALSN S+         LFK +DGF 
Sbjct: 1   MSLKRLQSARNLYHSSQI---RPSHLLGSFRNYSNALSNASD---------LFKPNDGFS 48

Query: 62  LAGGKTLTLRSTMAAELSIFMNDKRMLSTQLK--GSSLSRAVGTQISVSSPGFIYEPYEP 119
            A  KTLT RSTMAAE SIFMND++M ++ +K   ++  R +G QI +SSPG IYEPYEP
Sbjct: 49  FANVKTLTFRSTMAAEFSIFMNDRKMSTSAVKVRPNAQVRPMGAQICLSSPGIIYEPYEP 108

Query: 120 REKIPFWQRWFTRSGWKRTKQDVILELKSAYAIQKLRKSGYSKSRFYNEAFKMYKEINAL 179
           REKIPFW+R FTRSGW+RTK D+++E+K+AY I +LRK+GYSK +FY EA  MYK+IN L
Sbjct: 109 REKIPFWKRMFTRSGWERTKSDLMMEVKNAYTIARLRKTGYSKKQFYLEAISMYKQINTL 168

Query: 180 IANGDKKSLRKAVTEKMYSALKNEIKQRETTWNKVYWELIEPVIRIRTLRARLIGVDPKD 239
           IANGDK SLRKAVTEKM+S LKNEIK RETTW++VYWE++EPV+ IRTLRAR++GVD  D
Sbjct: 169 IANGDKHSLRKAVTEKMFSTLKNEIKVRETTWSRVYWEMVEPVVLIRTLRARMLGVDKSD 228

Query: 240 LNKVFVQLTLEITAKQKFEAYDSKGSVVAGDKNKEVLVRDIWVFEKSMFHPGAYWRLCGR 299
            NKVF Q+TLEI AKQKFEAYDSKGSVVAGDKNKEVLVRDIW+FEK  F P +YWRLCGR
Sbjct: 229 TNKVFYQITLEILAKQKFEAYDSKGSVVAGDKNKEVLVRDIWIFEKPSFLPRSYWRLCGR 288

Query: 300 LSPKAS 305
           +SPKAS
Sbjct: 289 ISPKAS 294


>Medtr1g082380.2 | protein translocase family protein | HC |
           chr1:36629502-36623273 | 20130731
          Length = 249

 Score =  329 bits (843), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 164/256 (64%), Positives = 198/256 (77%), Gaps = 14/256 (5%)

Query: 2   MPLKRFHAVRTLYRSSQIGQDSSSYLLGSCRSYSNALSNGSEGNFKSFHSHLFKGHDGFP 61
           M LKR  + R LY SSQI     S+LLGS R+YSNALSN S+         LFK +DGF 
Sbjct: 1   MSLKRLQSARNLYHSSQI---RPSHLLGSFRNYSNALSNASD---------LFKPNDGFS 48

Query: 62  LAGGKTLTLRSTMAAELSIFMNDKRMLSTQLK--GSSLSRAVGTQISVSSPGFIYEPYEP 119
            A  KTLT RSTMAAE SIFMND++M ++ +K   ++  R +G QI +SSPG IYEPYEP
Sbjct: 49  FANVKTLTFRSTMAAEFSIFMNDRKMSTSAVKVRPNAQVRPMGAQICLSSPGIIYEPYEP 108

Query: 120 REKIPFWQRWFTRSGWKRTKQDVILELKSAYAIQKLRKSGYSKSRFYNEAFKMYKEINAL 179
           REKIPFW+R FTRSGW+RTK D+++E+K+AY I +LRK+GYSK +FY EA  MYK+IN L
Sbjct: 109 REKIPFWKRMFTRSGWERTKSDLMMEVKNAYTIARLRKTGYSKKQFYLEAISMYKQINTL 168

Query: 180 IANGDKKSLRKAVTEKMYSALKNEIKQRETTWNKVYWELIEPVIRIRTLRARLIGVDPKD 239
           IANGDK SLRKAVTEKM+S LKNEIK RETTW++VYWE++EPV+ IRTLRAR++GVD  D
Sbjct: 169 IANGDKHSLRKAVTEKMFSTLKNEIKVRETTWSRVYWEMVEPVVLIRTLRARMLGVDKSD 228

Query: 240 LNKVFVQLTLEITAKQ 255
            NKVF Q+TLEI AKQ
Sbjct: 229 TNKVFYQITLEILAKQ 244