Miyakogusa Predicted Gene

Lj5g3v1452150.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1452150.1 tr|B9I821|B9I821_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_893686
PE=3,50.94,2e-16,seg,NULL,CUFF.55264.1
         (154 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g082310.1 | receptor-like cytosolic Serine/Threonine-kinas...   127   3e-30

>Medtr1g082310.1 | receptor-like cytosolic Serine/Threonine-kinase |
           HC | chr1:36603939-36599560 | 20130731
          Length = 471

 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/154 (48%), Positives = 95/154 (61%), Gaps = 18/154 (11%)

Query: 6   VALQQDYC-----LWEPKKSSDHKSKEVRDTNNVKPQTLGYLLSCSSSSAQDLRHWDLER 60
           +A++ D+C     LW+ K+S   KSK++           G L +CS+S AQDLR+ DLE+
Sbjct: 1   MAIEGDFCPINQGLWKHKRSFASKSKKI-----------GSLFACSAS-AQDLRNMDLEK 48

Query: 61  EKDDDGTPRGVLEACMKEFDSPLLHXXXXXXXXXKAKSHWRNXXXXXXXXXXXXLTSSIP 120
           EKDD+ +PRGVLEAC+K FD+  L          +A+SHW              LT SI 
Sbjct: 49  EKDDEASPRGVLEACVKGFDAQQLPEPETSCSNSRARSHWGKFFKLWKRKSVKRLT-SIH 107

Query: 121 HIGVPKIPKWKSRSTREHPVRSKLYNFRSSLITF 154
            IGVPKIPKWKSRSTRE+ V S LYNFRSSL+TF
Sbjct: 108 SIGVPKIPKWKSRSTRENFVTSNLYNFRSSLVTF 141