Miyakogusa Predicted Gene

Lj5g3v1425440.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1425440.1 CUFF.55239.1
         (145 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g017420.1 | ribosomal protein L34 | HC | chr8:5907605-5911...   159   8e-40

>Medtr8g017420.1 | ribosomal protein L34 | HC | chr8:5907605-5911187
           | 20130731
          Length = 133

 Score =  159 bits (402), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 88/147 (59%), Positives = 105/147 (71%), Gaps = 16/147 (10%)

Query: 1   MASKTLLRSGSTLLNRFS--NSKSXXXXXXXXXXXXXQLFQIPPLSKLPSFPQNDADSPS 58
           MASK+LLR+G+ LLNR S  NSKS             Q +  P +SKL +FPQ+DA+S  
Sbjct: 1   MASKSLLRNGAALLNRLSLSNSKSLINYNNP------QPYLFPSISKLQNFPQDDAESVK 54

Query: 59  KLLASQGFLYPCGLPDLSFFLPQATVDVSYECPSNEEDPMLLFPKRSYQPSTLRRKRVHG 118
           KLL S GFLYPCGLP L FFLP           S+ ++PM+LFPKR++QPST+RRKR HG
Sbjct: 55  KLLCSDGFLYPCGLPSLRFFLPDGD--------SSSDEPMILFPKRTFQPSTIRRKRNHG 106

Query: 119 FFARKATKGGRRVIARRIAKGRSRITA 145
           FFARKAT+GGRRVIARR+AKGR RITA
Sbjct: 107 FFARKATRGGRRVIARRVAKGRFRITA 133