Miyakogusa Predicted Gene
- Lj5g3v1381580.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1381580.2 tr|Q9AT24|Q9AT24_PEA Histone H1 (Fragment)
OS=Pisum sativum GN=His1 PE=3 SV=1,64.94,4e-19,seg,NULL;
Linker_histone,Histone H1/H5; "Winged helix" DNA-binding domain,NULL;
HISTONEH5,Histone H5,CUFF.55202.2
(197 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g080700.1 | linker histone H1 and h5 family protein | HC |... 117 9e-27
Medtr7g096280.1 | linker histone H1 and h5 family protein | HC |... 91 6e-19
Medtr1g070390.1 | linker histone H1 and h5 family protein | HC |... 84 9e-17
Medtr1g070435.1 | linker histone H1 and h5 family protein | HC |... 84 1e-16
Medtr1g070440.1 | linker histone H1 and h5 family protein | HC |... 80 2e-15
Medtr5g021730.1 | linker histone H1 and h5 family protein | HC |... 71 6e-13
Medtr8g106980.1 | linker histone H1 and h5 family protein | HC |... 57 8e-09
Medtr6g079520.1 | linker histone H1 and h5 family protein | HC |... 57 1e-08
Medtr4g084700.1 | linker histone H1 and h5 family protein | HC |... 53 2e-07
Medtr2g099610.1 | MYB transcription factor MYB91 | HC | chr2:427... 51 8e-07
Medtr1g048840.1 | linker histone H1 and h5 family protein | LC |... 50 9e-07
Medtr8g018410.1 | MYB transcription factor MYB91 | HC | chr8:626... 50 2e-06
Medtr4g097130.2 | MYB transcription factor | HC | chr4:40022040-... 49 3e-06
Medtr4g097130.4 | MYB transcription factor | HC | chr4:40022601-... 49 3e-06
Medtr4g097130.1 | MYB transcription factor | HC | chr4:40022042-... 49 3e-06
Medtr4g097130.3 | MYB transcription factor | HC | chr4:40022042-... 49 3e-06
Medtr8g494240.6 | myb transcription factor | HC | chr8:39453713-... 48 6e-06
Medtr8g494240.5 | myb transcription factor | HC | chr8:39453713-... 48 6e-06
Medtr8g494240.2 | myb transcription factor | HC | chr8:39453713-... 48 7e-06
Medtr8g494240.1 | myb transcription factor | HC | chr8:39453722-... 48 7e-06
Medtr8g494240.3 | myb transcription factor | HC | chr8:39453713-... 48 7e-06
Medtr8g494240.4 | myb transcription factor | HC | chr8:39453713-... 48 7e-06
>Medtr1g080700.1 | linker histone H1 and h5 family protein | HC |
chr1:35890649-35889690 | 20130731
Length = 184
Score = 117 bits (292), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/69 (85%), Positives = 63/69 (91%)
Query: 15 LSHPPFAEMITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKSVAAGKL 74
LSHP +AEMITEAI SLKERTGSSQHAITKFIE KHK+L PTFRKLIL LKKSVA+GKL
Sbjct: 21 LSHPTYAEMITEAIVSLKERTGSSQHAITKFIEEKHKDLSPTFRKLILLHLKKSVASGKL 80
Query: 75 VKVKNSFKL 83
VKVKNSFK+
Sbjct: 81 VKVKNSFKI 89
>Medtr7g096280.1 | linker histone H1 and h5 family protein | HC |
chr7:38619056-38620408 | 20130731
Length = 306
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 56/68 (82%)
Query: 16 SHPPFAEMITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKSVAAGKLV 75
+HP + EM+T+AI +LKE+ GSSQ+A+ KFIE KHK LP F+K++L Q+KK VA+GKLV
Sbjct: 61 THPTYEEMVTDAIVTLKEKNGSSQYALAKFIEEKHKNLPANFKKILLVQIKKLVASGKLV 120
Query: 76 KVKNSFKL 83
KVK S+KL
Sbjct: 121 KVKGSYKL 128
>Medtr1g070390.1 | linker histone H1 and h5 family protein | HC |
chr1:31172959-31174011 | 20130731
Length = 248
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 57/68 (83%)
Query: 16 SHPPFAEMITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKSVAAGKLV 75
SHP + EMI +AI SLKERTGSSQ+AI KFIE KHK+LP F+KL+L LKK+VA+GKLV
Sbjct: 62 SHPTYEEMIKDAIVSLKERTGSSQYAIAKFIEEKHKQLPSNFKKLLLQNLKKNVASGKLV 121
Query: 76 KVKNSFKL 83
KVK SFKL
Sbjct: 122 KVKGSFKL 129
>Medtr1g070435.1 | linker histone H1 and h5 family protein | HC |
chr1:31227498-31226382 | 20130731
Length = 254
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 57/68 (83%)
Query: 16 SHPPFAEMITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKSVAAGKLV 75
SHP + EMI +AI SLKERTGSSQ+AI KFIE KHK+LP F+KL+L LKK+VA+GKLV
Sbjct: 62 SHPTYEEMIKDAIVSLKERTGSSQYAIAKFIEEKHKQLPSNFKKLLLQNLKKNVASGKLV 121
Query: 76 KVKNSFKL 83
KVK SFKL
Sbjct: 122 KVKGSFKL 129
>Medtr1g070440.1 | linker histone H1 and h5 family protein | HC |
chr1:31232639-31231541 | 20130731
Length = 224
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 57/68 (83%)
Query: 16 SHPPFAEMITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKSVAAGKLV 75
SHP + EMI +AI +LKERTGSSQ AI KFIE KHK+LP F+KL+LH LKK+VA+GKL+
Sbjct: 9 SHPTYEEMIKDAIVTLKERTGSSQFAIAKFIEEKHKQLPSNFKKLLLHNLKKNVASGKLI 68
Query: 76 KVKNSFKL 83
KVK SFKL
Sbjct: 69 KVKGSFKL 76
>Medtr5g021730.1 | linker histone H1 and h5 family protein | HC |
chr5:8467951-8467384 | 20130731
Length = 164
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Query: 16 SHPPFAEMITEAIASLKERTGSSQHAITKFIEGKHKE-LPPTFRKLILHQLKKSVAAGKL 74
SHPP+ EM+ EA+ +LKER GSS +AI K+++ K K LP F+K++ QLK GKL
Sbjct: 34 SHPPYFEMVKEALLALKERNGSSPYAIAKYMDEKFKPVLPANFKKILSLQLKNQTKRGKL 93
Query: 75 VKVKNSFKL 83
VK+K S+KL
Sbjct: 94 VKIKASYKL 102
>Medtr8g106980.1 | linker histone H1 and h5 family protein | HC |
chr8:45185546-45188667 | 20130731
Length = 422
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 17 HPPFAEMITEAIASLKERTGSSQHAITKFIEGKHKE-LPPTFRKLILHQLKKSVAAGKLV 75
HPP+AEMI +AI +LKE+ GSS+ AI K+IE +K+ LPP L+ L +AG L+
Sbjct: 27 HPPYAEMIYKAIEALKEKDGSSKRAIGKYIEHVYKQVLPPEHSTLLTQHLNHLKSAGLLI 86
Query: 76 KVKNSFK 82
K S+K
Sbjct: 87 MFKKSYK 93
>Medtr6g079520.1 | linker histone H1 and h5 family protein | HC |
chr6:29989072-29995626 | 20130731
Length = 553
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 15 LSHPPFAEMITEAIASLKERTGSSQHAITKFIEGKHKELPP---TFRKLILHQLKKSVAA 71
+HPP+AEMI AI +LKE+ GSS+ AI+K+IE +++ P + + L+ H LK+ +
Sbjct: 40 FNHPPYAEMIYTAIEALKEKDGSSKRAISKYIEHVYRDQLPNSESHQNLLTHHLKRLKSE 99
Query: 72 GKLVKVKNSF 81
G L +KNS+
Sbjct: 100 GLLQMIKNSY 109
>Medtr4g084700.1 | linker histone H1 and h5 family protein | HC |
chr4:33010895-33015140 | 20130731
Length = 548
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 45/64 (70%)
Query: 16 SHPPFAEMITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKSVAAGKLV 75
+HPP+A MI +AI LK++ GS++ AI++F++ ++++LP K++ LK+ AG++V
Sbjct: 75 THPPYALMINKAITELKDKIGSTEEAISEFVKREYEDLPWAHGKILSLHLKRLCEAGEIV 134
Query: 76 KVKN 79
+N
Sbjct: 135 CNEN 138
>Medtr2g099610.1 | MYB transcription factor MYB91 | HC |
chr2:42708481-42713744 | 20130731
Length = 303
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 17 HPPFAEMITEAIASLKERTGSSQHAITKFIEGKHKELPPT--FRKLILHQLKKSVAAGKL 74
+P + +I EA++++K+ GS +AI FIE KH LP + FR+ + +L++ V GKL
Sbjct: 139 YPQYNSLIFEALSTIKDPNGSDLNAIISFIEQKH-SLPQSQNFRRTLGAKLRRLVGQGKL 197
Query: 75 VKVKNSFKL 83
KV+N +K+
Sbjct: 198 EKVQNGYKI 206
>Medtr1g048840.1 | linker histone H1 and h5 family protein | LC |
chr1:18841060-18840386 | 20130731
Length = 197
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 16 SHPPFAEMITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKSVAAGKLV 75
HPP+ MI +AI L + GS++ AI++FI ++++LP ++ +L+K G+LV
Sbjct: 58 DHPPYHWMINKAIKELNDECGSTEAAISEFIRREYEDLPTAHATILQLKLRKLCMNGELV 117
Query: 76 KVKN 79
KN
Sbjct: 118 CTKN 121
>Medtr8g018410.1 | MYB transcription factor MYB91 | HC |
chr8:6260085-6256115 | 20130731
Length = 286
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 18 PPFAEMITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKSVAAGKLVKV 77
P + MI EA+++LK+ GS AI FIE KH ++P F+K + +L+ V GKL K
Sbjct: 120 PRYDVMIYEALSTLKDTNGSDVIAIASFIEQKH-QVPQNFKKSLKARLRMLVGHGKLEKE 178
Query: 78 KNSFKL 83
+N FK+
Sbjct: 179 QNCFKI 184
>Medtr4g097130.2 | MYB transcription factor | HC |
chr4:40022040-40016760 | 20130731
Length = 309
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 24 ITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKSVAAGKLVKVKNSFKL 83
+ EAI ++KE GS + AI +IE K+ + PP RKL+ +L++ V +GK+V+ K+ +K+
Sbjct: 140 VLEAIVNMKEPKGSDKAAIASYIEEKY-QCPPNLRKLLSAKLQQMVTSGKIVQEKHKYKI 198
>Medtr4g097130.4 | MYB transcription factor | HC |
chr4:40022601-40016760 | 20130731
Length = 308
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 24 ITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKSVAAGKLVKVKNSFKL 83
+ EAI ++KE GS + AI +IE K+ + PP RKL+ +L++ V +GK+V+ K+ +K+
Sbjct: 140 VLEAIVNMKEPKGSDKAAIASYIEEKY-QCPPNLRKLLSAKLQQMVTSGKIVQEKHKYKI 198
>Medtr4g097130.1 | MYB transcription factor | HC |
chr4:40022042-40016760 | 20130731
Length = 308
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 24 ITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKSVAAGKLVKVKNSFKL 83
+ EAI ++KE GS + AI +IE K+ + PP RKL+ +L++ V +GK+V+ K+ +K+
Sbjct: 140 VLEAIVNMKEPKGSDKAAIASYIEEKY-QCPPNLRKLLSAKLQQMVTSGKIVQEKHKYKI 198
>Medtr4g097130.3 | MYB transcription factor | HC |
chr4:40022042-40016760 | 20130731
Length = 313
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 24 ITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKSVAAGKLVKVKNSFKL 83
+ EAI ++KE GS + AI +IE K+ + PP RKL+ +L++ V +GK+V+ K+ +K+
Sbjct: 145 VLEAIVNMKEPKGSDKAAIASYIEEKY-QCPPNLRKLLSAKLQQMVTSGKIVQEKHKYKI 203
>Medtr8g494240.6 | myb transcription factor | HC |
chr8:39453713-39459260 | 20130731
Length = 306
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 20 FAEMITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKSVAAGKLVKVKN 79
+I EAI+SL E GS+ I FIE +++ P F+KL+ +LK ++GKL+KVK
Sbjct: 123 LDNLILEAISSLNELGGSNTTTIASFIEDQYRP-PADFKKLLSAKLKYLTSSGKLIKVKR 181
Query: 80 SFKL 83
+++
Sbjct: 182 RYRI 185
>Medtr8g494240.5 | myb transcription factor | HC |
chr8:39453713-39459255 | 20130731
Length = 306
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 20 FAEMITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKSVAAGKLVKVKN 79
+I EAI+SL E GS+ I FIE +++ P F+KL+ +LK ++GKL+KVK
Sbjct: 123 LDNLILEAISSLNELGGSNTTTIASFIEDQYRP-PADFKKLLSAKLKYLTSSGKLIKVKR 181
Query: 80 SFKL 83
+++
Sbjct: 182 RYRI 185
>Medtr8g494240.2 | myb transcription factor | HC |
chr8:39453713-39462757 | 20130731
Length = 402
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 20 FAEMITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKSVAAGKLVKVKN 79
+I EAI+SL E GS+ I FIE +++ P F+KL+ +LK ++GKL+KVK
Sbjct: 123 LDNLILEAISSLNELGGSNTTTIASFIEDQYRP-PADFKKLLSAKLKYLTSSGKLIKVKR 181
Query: 80 SFKL 83
+++
Sbjct: 182 RYRI 185
>Medtr8g494240.1 | myb transcription factor | HC |
chr8:39453722-39462757 | 20130731
Length = 402
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 20 FAEMITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKSVAAGKLVKVKN 79
+I EAI+SL E GS+ I FIE +++ P F+KL+ +LK ++GKL+KVK
Sbjct: 123 LDNLILEAISSLNELGGSNTTTIASFIEDQYRP-PADFKKLLSAKLKYLTSSGKLIKVKR 181
Query: 80 SFKL 83
+++
Sbjct: 182 RYRI 185
>Medtr8g494240.3 | myb transcription factor | HC |
chr8:39453713-39459255 | 20130731
Length = 299
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 20 FAEMITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKSVAAGKLVKVKN 79
+I EAI+SL E GS+ I FIE +++ P F+KL+ +LK ++GKL+KVK
Sbjct: 123 LDNLILEAISSLNELGGSNTTTIASFIEDQYRP-PADFKKLLSAKLKYLTSSGKLIKVKR 181
Query: 80 SFKL 83
+++
Sbjct: 182 RYRI 185
>Medtr8g494240.4 | myb transcription factor | HC |
chr8:39453713-39459260 | 20130731
Length = 299
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 20 FAEMITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKSVAAGKLVKVKN 79
+I EAI+SL E GS+ I FIE +++ P F+KL+ +LK ++GKL+KVK
Sbjct: 123 LDNLILEAISSLNELGGSNTTTIASFIEDQYRP-PADFKKLLSAKLKYLTSSGKLIKVKR 181
Query: 80 SFKL 83
+++
Sbjct: 182 RYRI 185