Miyakogusa Predicted Gene
- Lj5g3v1355040.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1355040.1 Non Characterized Hit- tr|I1LG02|I1LG02_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,82.93,0,SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; RRM,RNA recognition motif domain;
no description,Nu,CUFF.55179.1
(231 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 349 1e-96
Medtr1g080150.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 206 2e-53
Medtr1g080150.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 205 3e-53
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 75 4e-14
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 74 1e-13
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 72 4e-13
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 72 4e-13
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 72 4e-13
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 72 4e-13
Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC | ch... 72 5e-13
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 71 9e-13
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 71 1e-12
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 70 1e-12
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 70 2e-12
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 68 6e-12
Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC | ch... 66 2e-11
Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC | ch... 66 2e-11
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 66 3e-11
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 66 3e-11
Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC | ch... 65 5e-11
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 65 6e-11
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 8e-11
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 2e-10
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 2e-10
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 3e-10
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 1e-09
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 60 2e-09
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 59 3e-09
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 59 6e-09
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 57 1e-08
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 57 1e-08
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 57 1e-08
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 4e-08
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 55 5e-08
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 6e-08
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 9e-08
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 9e-08
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 9e-08
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 53 2e-07
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 3e-07
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 3e-07
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 52 3e-07
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104... 51 7e-07
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 51 8e-07
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 51 9e-07
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 1e-06
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 1e-06
Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit, spl... 51 1e-06
Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit, spl... 50 1e-06
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 1e-06
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 1e-06
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 1e-06
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit, spl... 50 2e-06
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit, spl... 50 2e-06
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 3e-06
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 3e-06
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 3e-06
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 49 6e-06
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 49 6e-06
>Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:35593441-35588449 | 20130731
Length = 240
Score = 349 bits (895), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 177/240 (73%), Positives = 191/240 (79%), Gaps = 9/240 (3%)
Query: 1 MATPASSTALQSQFTYSDASYFPVPFHLQQPATTH---------XXXXXXXXXXXXXXXX 51
M TP SS++ Q QFTYS+A YFPVPFHLQQPATT
Sbjct: 1 MTTPPSSSSSQPQFTYSNAPYFPVPFHLQQPATTSHYAAPYVAAPAVQLPPPPIVGPVPP 60
Query: 52 XXXXXXXXXXXHQLFERDAQIITPEALESVKAAIARSDVEHKADTKKKAVPRKAAGQTWE 111
QLFERDAQIITPEALE+VKAAIA SDVEHKA+TKKKAVPRKAAGQ WE
Sbjct: 61 PAAYSVPQYQAQQLFERDAQIITPEALENVKAAIASSDVEHKAETKKKAVPRKAAGQAWE 120
Query: 112 DPVLAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSF 171
DP+LAEWPEDDYRLFCGDLGNEVNDDVLSKAF+RFPSFN+ARVVRDKRTGKTKGYGF+SF
Sbjct: 121 DPILAEWPEDDYRLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISF 180
Query: 172 ANPADLAAALKEMNGKYVGNRPIKLRKSKWKERTDYEALEKQKNQLHKKPKLPRKGVLHK 231
ANPADLAAALKEMNGKYVGNRPIKLRKSKW+ERTDY+ALEKQKN + KKPK+ RK +LHK
Sbjct: 181 ANPADLAAALKEMNGKYVGNRPIKLRKSKWRERTDYDALEKQKNHIQKKPKMSRKSILHK 240
>Medtr1g080150.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:35593402-35588449 | 20130731
Length = 168
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 110/163 (67%), Positives = 118/163 (72%), Gaps = 9/163 (5%)
Query: 1 MATPASSTALQSQFTYSDASYFPVPFHLQQPATTH---------XXXXXXXXXXXXXXXX 51
M TP SS++ Q QFTYS+A YFPVPFHLQQPATT
Sbjct: 1 MTTPPSSSSSQPQFTYSNAPYFPVPFHLQQPATTSHYAAPYVAAPAVQLPPPPIVGPVPP 60
Query: 52 XXXXXXXXXXXHQLFERDAQIITPEALESVKAAIARSDVEHKADTKKKAVPRKAAGQTWE 111
QLFERDAQIITPEALE+VKAAIA SDVEHKA+TKKKAVPRKAAGQ WE
Sbjct: 61 PAAYSVPQYQAQQLFERDAQIITPEALENVKAAIASSDVEHKAETKKKAVPRKAAGQAWE 120
Query: 112 DPVLAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNIARV 154
DP+LAEWPEDDYRLFCGDLGNEVNDDVLSKAF+RFPSFN+ARV
Sbjct: 121 DPILAEWPEDDYRLFCGDLGNEVNDDVLSKAFTRFPSFNMARV 163
>Medtr1g080150.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:35593402-35588449 | 20130731
Length = 165
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 109/163 (66%), Positives = 118/163 (72%), Gaps = 9/163 (5%)
Query: 1 MATPASSTALQSQFTYSDASYFPVPFHLQQPATTH---------XXXXXXXXXXXXXXXX 51
M TP SS++ Q QFTYS+A YFPVPFHLQQPATT
Sbjct: 1 MTTPPSSSSSQPQFTYSNAPYFPVPFHLQQPATTSHYAAPYVAAPAVQLPPPPIVGPVPP 60
Query: 52 XXXXXXXXXXXHQLFERDAQIITPEALESVKAAIARSDVEHKADTKKKAVPRKAAGQTWE 111
QLFERDAQIITPEALE+VKAAIA SDVEHKA+TKKKAVPRKAAGQ WE
Sbjct: 61 PAAYSVPQYQAQQLFERDAQIITPEALENVKAAIASSDVEHKAETKKKAVPRKAAGQAWE 120
Query: 112 DPVLAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNIARV 154
DP+LAEWPEDDYRLFCGDLGNEVNDDVLSKAF+RFPSFN+AR+
Sbjct: 121 DPILAEWPEDDYRLFCGDLGNEVNDDVLSKAFTRFPSFNMARI 163
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 122 DYRLFCGDLGNEVNDDVLSKAFSR-FPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAA 180
D +F GDL +V D VL + FS +PS A+VV D TG++KGYGFV F + ++ + A
Sbjct: 189 DLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQA 248
Query: 181 LKEMNGKYVGNRPIKL 196
+ +MNG Y +RP+++
Sbjct: 249 MTQMNGVYCSSRPMRI 264
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 122 DYRLFCGDLGNEVNDDVLSKAFSR-FPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAA 180
D +F GDL +V D VL + FS +PS A+VV D TG++KGYGFV F + ++ + A
Sbjct: 189 DLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQA 248
Query: 181 LKEMNGKYVGNRPIKL 196
+ +MNG Y +RP+++
Sbjct: 249 MTQMNGVYCSSRPMRI 264
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 49/75 (65%)
Query: 123 YRLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALK 182
+ +F GDL EV D L FS + + + ARV+ D +TG++KGYGFVSF + D +A+
Sbjct: 145 FNVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAIN 204
Query: 183 EMNGKYVGNRPIKLR 197
+M GK++GNR I+
Sbjct: 205 DMTGKWLGNRQIRCN 219
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 49/75 (65%)
Query: 123 YRLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALK 182
+ +F GDL EV D L FS + + + ARV+ D +TG++KGYGFVSF + D +A+
Sbjct: 145 FNVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAIN 204
Query: 183 EMNGKYVGNRPIKLR 197
+M GK++GNR I+
Sbjct: 205 DMTGKWLGNRQIRCN 219
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 49/75 (65%)
Query: 123 YRLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALK 182
+ +F GDL EV D L FS + + + ARV+ D +TG++KGYGFVSF + D +A+
Sbjct: 129 FNVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAIN 188
Query: 183 EMNGKYVGNRPIKLR 197
+M GK++GNR I+
Sbjct: 189 DMTGKWLGNRQIRCN 203
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Query: 122 DYRLFCGDLGNEVNDDVLSKAF-SRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAA 180
D+ +F GDL +V D +L + F + + S A+VV D TG++KGYGFV F++ ++ A
Sbjct: 107 DHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRA 166
Query: 181 LKEMNGKYVGNRPIKLRKSKWKERTDYE 208
+ EMNG Y RP+++ + K+ T Y+
Sbjct: 167 MSEMNGVYCSTRPMRISAATPKKTTGYQ 194
>Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 300
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Query: 122 DYRLFCGDLGNEVNDDVLSKAFS-RFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAA 180
D +F GDL +V D +L + FS ++PS A+VV D TG++KGYGFV F + + + A
Sbjct: 186 DLSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKA 245
Query: 181 LKEMNGKYVGNRPIKLRKSKWKERTDYE 208
L EMNG + +R +++ + ++ + Y+
Sbjct: 246 LNEMNGVFCSSRAMRIGAATPRKSSGYQ 273
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Query: 122 DYRLFCGDLGNEVNDDVLSKAFS-RFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAA 180
D +F GDL +V D +L + FS ++PS A+VV D TG++KGYGFV F + + + A
Sbjct: 186 DLSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKA 245
Query: 181 LKEMNGKYVGNRPIKLRKSKWKERTDYE 208
L EMNG + +R +++ + ++ + Y+
Sbjct: 246 LNEMNGVFCSSRAMRIGAATPRKSSGYQ 273
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 123 YRLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALK 182
Y +F GDL EV D L FS + S + ARV+ D++TG+++G+GFVSF + D +A+
Sbjct: 147 YNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAIN 206
Query: 183 EMNGKYVGNRPIKLRKSKWKERTDYEALEKQKN 215
++ GK++G+R I+ W + EKQ +
Sbjct: 207 DLTGKWLGSRQIRC---NWATKGAGGIEEKQNS 236
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 50/74 (67%)
Query: 123 YRLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALK 182
+ +F GDL EV D L FS + S + ARV+ D++TG+++G+GFVSF N + +A+
Sbjct: 131 FHIFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAIN 190
Query: 183 EMNGKYVGNRPIKL 196
++ GK++G+R I+
Sbjct: 191 DLTGKWLGSRQIRC 204
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 122 DYRLFCGDLGNEVNDDVLSKAF-SRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAA 180
D +F GDL +V D +L + F S+F S A+VV D TG++KGYGFV F + ++ A
Sbjct: 213 DLSVFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRA 272
Query: 181 LKEMNGKYVGNRPIKL 196
+ EMNG Y +RP+++
Sbjct: 273 MTEMNGVYCSSRPMRV 288
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 122 DYRLFCGDLGNEVNDDVLSKAF-SRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAA 180
DY +F GDL +V+D L++ F +R+ S A+VV D+ TG+TKGYGFV FA+ ++ A
Sbjct: 166 DYTIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRA 225
Query: 181 LKEMNGKYVGNRPIKL 196
+ EM G RP+++
Sbjct: 226 MTEMQGVLCSTRPMRI 241
>Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991101 | 20130731
Length = 271
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 122 DYRLFCGDLGNEVNDDVLSKAF-SRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAA 180
D+ +F GDL +V D +L + F +R+ S A+VV D+ TG++KGYGFV FA+ + A
Sbjct: 154 DHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRA 213
Query: 181 LKEMNGKYVGNRPIKL 196
+ EM G RP+++
Sbjct: 214 MTEMQGVLCSTRPMRI 229
>Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991094 | 20130731
Length = 271
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 122 DYRLFCGDLGNEVNDDVLSKAF-SRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAA 180
D+ +F GDL +V D +L + F +R+ S A+VV D+ TG++KGYGFV FA+ + A
Sbjct: 154 DHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRA 213
Query: 181 LKEMNGKYVGNRPIKL 196
+ EM G RP+++
Sbjct: 214 MTEMQGVLCSTRPMRI 229
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 103 RKAAGQTWEDPVLAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGK 162
R G T+ + + ++++ G+LG ++ L KAF++ P A+VV ++ GK
Sbjct: 192 RVQMGSTYRG-----YVDSPHKIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGK 246
Query: 163 TKGYGFVSFANPADLAAALKEMNGKYVGNRPIKLR 197
++GYGFVSF D+ AL MNG V RP++L+
Sbjct: 247 SRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLK 281
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 103 RKAAGQTWEDPVLAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGK 162
R G T+ + + ++++ G+LG ++ L KAF++ P A+VV ++ GK
Sbjct: 192 RVQMGSTYRG-----YVDSPHKIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGK 246
Query: 163 TKGYGFVSFANPADLAAALKEMNGKYVGNRPIKLR 197
++GYGFVSF D+ AL MNG V RP++L+
Sbjct: 247 SRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLK 281
>Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7990818 | 20130731
Length = 284
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 122 DYRLFCGDLGNEVNDDVLSKAF-SRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAA 180
D+ +F GDL +V D +L + F +R+ S A+VV D+ TG++KGYGFV FA+ + A
Sbjct: 154 DHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRA 213
Query: 181 LKEMNGKYVGNRPIKL 196
+ EM G RP+++
Sbjct: 214 MTEMQGVLCSTRPMRI 229
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 122 DYRLFCGDLGNEVNDDVLSKAF-SRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAA 180
D+ +F GDL +V D +L + F +R+ S A+VV D+ TG++KGYGFV FA+ + A
Sbjct: 154 DHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRA 213
Query: 181 LKEMNGKYVGNRPIKL 196
+ EM G RP+++
Sbjct: 214 MTEMQGVLCSTRPMRI 229
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 122 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAAL 181
+YR F G L + L +AFS+F ++V+ D+ TG+++G+GFV+FA + A+
Sbjct: 7 EYRCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAI 66
Query: 182 KEMNGKYVGNRPIKLRKSK 200
+EMNG+ + R I + +++
Sbjct: 67 EEMNGQDIDGRNITVNEAQ 85
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 51/79 (64%)
Query: 122 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAAL 181
+YR F G L +++ L KAFS++ ++++ D+ TG+++G+GFV+FAN + A+
Sbjct: 5 EYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAI 64
Query: 182 KEMNGKYVGNRPIKLRKSK 200
+ MNG+ + R I + +++
Sbjct: 65 EAMNGQDLDGRNITVNQAQ 83
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 51/79 (64%)
Query: 122 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAAL 181
+YR F G L +++ L KAFS++ ++++ D+ TG+++G+GFV+FAN + A+
Sbjct: 5 EYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAI 64
Query: 182 KEMNGKYVGNRPIKLRKSK 200
+ MNG+ + R I + +++
Sbjct: 65 EAMNGQDLDGRNITVNQAQ 83
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 52/85 (61%)
Query: 118 WPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADL 177
+PE +Y+LF G+L V + L++AF + ARV+ D TGK++GYGFVS+A +++
Sbjct: 199 YPETEYKLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEM 258
Query: 178 AAALKEMNGKYVGNRPIKLRKSKWK 202
AL M+ + R +++ ++ K
Sbjct: 259 DTALAIMDNVELEGRTLRVSLAQGK 283
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 50/79 (63%)
Query: 122 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAAL 181
+YR F G L + + L KAFS++ ++++ D+ TG+++G+GFV+FA+ + A+
Sbjct: 7 EYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAI 66
Query: 182 KEMNGKYVGNRPIKLRKSK 200
+ MNG+ + R I + +++
Sbjct: 67 EGMNGQDMDGRNITVNEAQ 85
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 125 LFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALKEM 184
L+ ++ +N++ L + FS F + +V+ D R G++KG GFV+F P + + A+ EM
Sbjct: 306 LYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDAR-GRSKGVGFVAFTTPEEASKAIDEM 364
Query: 185 NGKYVGNRPIKLRKSKWKE 203
NGK +G +P+ + ++ KE
Sbjct: 365 NGKIIGQKPVYVSVAQRKE 383
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 121 DDYRLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAA 180
++ L+ GDL VND L FS+ RV RD+ T + GYG+V+++N D A A
Sbjct: 23 ENSSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANA 82
Query: 181 LKEMNGKYVGNRPIKL 196
++ +N + +PI++
Sbjct: 83 MENLNYVPLNGKPIRI 98
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 125 LFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALKEM 184
L+ +L + V D+ LS+ FS F + +++RD + G ++G GFV+F+ P + AL EM
Sbjct: 308 LYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQ-GISRGSGFVAFSTPEEATRALAEM 366
Query: 185 NGKYVGNRPIKLRKSKWKE 203
NGK V +P+ + ++ KE
Sbjct: 367 NGKMVAGKPLYVAPAQKKE 385
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 125 LFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALKEM 184
L+ GDL ++V D L F++ R+ RD + ++ GYG+V+F+NP D A A+ +
Sbjct: 26 LYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVL 85
Query: 185 NGKYVGNRPIKLRKS 199
N + N+PI++ S
Sbjct: 86 NFTPLNNKPIRIMYS 100
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%)
Query: 123 YRLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALK 182
++++ G+LG +N L AF P A+++ ++ G+++G+GFV+F L AAL
Sbjct: 212 HKIYAGNLGWGMNSQDLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALN 271
Query: 183 EMNGKYVGNRPIKL 196
MNG V RP++L
Sbjct: 272 AMNGVEVQGRPLRL 285
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 125 LFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALKEM 184
L+ +L ++ N++ L FS F + RV+ D G +KG GFV+F+ P + AL EM
Sbjct: 315 LYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLDSH-GHSKGSGFVAFSTPEEANKALNEM 373
Query: 185 NGKYVGNRPIKLRKSKWKE 203
NGK VG +P+ + ++ KE
Sbjct: 374 NGKLVGRKPLFVAVAQRKE 392
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 125 LFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALKEM 184
L+ +L ++ N++ L FS F + RV+ D G +KG GFV+F+ P + AL EM
Sbjct: 315 LYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLDSH-GHSKGSGFVAFSTPEEANKALNEM 373
Query: 185 NGKYVGNRPIKLRKSKWKE 203
NGK VG +P+ + ++ KE
Sbjct: 374 NGKLVGRKPLFVAVAQRKE 392
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 125 LFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALKEM 184
L+ GDL V D L F++ RV RD T ++ GYG+V+++NP D A AL +
Sbjct: 36 LYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVL 95
Query: 185 NGKYVGNRPIKLRKS 199
N + NRPI++ S
Sbjct: 96 NFTPLNNRPIRIMYS 110
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 125 LFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALKEM 184
L+ +L + + D+ L + FS + + +V+RD G ++G GFV+F+ P + + AL EM
Sbjct: 318 LYVKNLDDSIADEKLKELFSSYGTITSCKVMRDP-NGVSRGSGFVAFSTPEEASRALLEM 376
Query: 185 NGKYVGNRPIKLRKSKWKE 203
NGK V ++P+ + ++ KE
Sbjct: 377 NGKMVASKPLYVTLAQRKE 395
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 125 LFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALKEM 184
+F +L DD L K F F + A V+RD GK+K +GFV+F + D A A++ +
Sbjct: 215 VFVKNLSESTTDDELKKTFGEFGTITSAVVMRDG-DGKSKCFGFVNFESTDDAARAVEAL 273
Query: 185 NGKYVGNRPIKLRKSKWKERTDYE 208
NGK + ++ + K++ K ++E
Sbjct: 274 NGKKIDDKEWYVGKAQKKSEREHE 297
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%)
Query: 96 TKKKAVPRKAAGQTWEDPVLAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNIARVV 155
T K + A +T +L +LF L N+ VL F + +V+
Sbjct: 6 TSSKLIATIANTRTLPQLLLCVRHHSSTKLFIAGLSYNTNETVLRDTFEQHGQIIEVKVI 65
Query: 156 RDKRTGKTKGYGFVSFANPADLAAALKEMNGKYVGNRPIKL 196
+ RTG++KGYGFV F + A A KE++G+ V R I++
Sbjct: 66 CNHRTGESKGYGFVRFNSETAAATARKELHGQIVDGRRIRV 106
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Query: 108 QTWEDPVLAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYG 167
QT ++ V+ ++ L+ +L + + D+ L + FS F + +++RD G ++G G
Sbjct: 302 QTVKESVVDKF--QGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDP-NGVSRGSG 358
Query: 168 FVSFANPADLAAALKEMNGKYVGNRPIKLRKSKWKE 203
FV+F+ P + + AL EMNGK + ++P+ + ++ KE
Sbjct: 359 FVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKE 394
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%)
Query: 125 LFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALKEM 184
L+ GDL VND L F++ RV RD T ++ GYG+V+F NP D A AL +
Sbjct: 34 LYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVL 93
Query: 185 NGKYVGNRPIKLRKS 199
N + N+ I++ S
Sbjct: 94 NFTPMNNKSIRVMYS 108
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 51/82 (62%)
Query: 124 RLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALKE 183
+L+ G + +D L ++F+R+ ARV+ D+ G++KG+GFV+FA + +AAL+
Sbjct: 41 KLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQA 100
Query: 184 MNGKYVGNRPIKLRKSKWKERT 205
M+ + + R +++ ++ + R+
Sbjct: 101 MDNQELHGRTVRVNYAQERPRS 122
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 50/81 (61%)
Query: 124 RLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALKE 183
+LF G + ++ L +AFSR+ A+++ D+ TG+++G+GF++FA + ++AL+
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 184 MNGKYVGNRPIKLRKSKWKER 204
M+ K + R +++ + + R
Sbjct: 101 MDNKELDGRTVRVNYATERAR 121
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 50/81 (61%)
Query: 124 RLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALKE 183
+LF G + ++ L +AFSR+ A+++ D+ TG+++G+GF++FA + ++AL+
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 184 MNGKYVGNRPIKLRKSKWKER 204
M+ K + R +++ + + R
Sbjct: 101 MDNKELDGRTVRVNYATERAR 121
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 123 YRLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALK 182
++LF G L + LS AFS + A+V+ D+ + K+KGYGFV+FA+ + A+
Sbjct: 32 FKLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAIT 91
Query: 183 EMNGKYVGNRPI 194
EMN K + R +
Sbjct: 92 EMNEKALNGRVV 103
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 50/84 (59%)
Query: 124 RLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALKE 183
R + G+L +V++ L + FS A+VV D+ TG+++G+GFV+ +N A++ A+
Sbjct: 217 RAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAA 276
Query: 184 MNGKYVGNRPIKLRKSKWKERTDY 207
++G+ R I++ ++ + R +
Sbjct: 277 LDGQSFNGRAIRVNVAEERPRRSF 300
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 57/115 (49%), Gaps = 19/115 (16%)
Query: 104 KAAGQTWEDPVLAEW-------------------PEDDYRLFCGDLGNEVNDDVLSKAFS 144
K G TWE+ A W P +D ++F G+L +V+ + L++ F
Sbjct: 84 KEDGATWENQADATWVGETESNENEEVEVASFEEPSEDLKIFVGNLPFDVDSEKLAQLFE 143
Query: 145 RFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALKEMNGKYVGNRPIKLRKS 199
+ + IA V+ ++ T +++G+GFV+ + ++ A+ + +G + R + + K+
Sbjct: 144 QSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNKFSGFELDGRLLTVNKA 198
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 124 RLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALKE 183
+LF G L V++ L AFS F R+V DK +G+ +G+GFV F+N +A
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDA 96
Query: 184 MNGKYVGNRPIKL 196
M+GK + RP+++
Sbjct: 97 MDGKALLGRPLRI 109
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 97 KKKAVPRKAAGQTWEDPVLAEWP----EDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNIA 152
K + R+ A Q+ + PV + +LF G L V+D L AF+ + A
Sbjct: 6 KIGNLLRQGATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEA 65
Query: 153 RVVRDKRTGKTKGYGFVSFANPADLAAALKEMNGKYVGNRPIKL 196
RV+ D+ TG+++G+GFV+F + +AL M+G+ + R I++
Sbjct: 66 RVITDRETGRSRGFGFVNFTSEESATSALS-MDGQDLNGRNIRV 108
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 10/112 (8%)
Query: 86 ARSDVEHKADTKKKAVPR-KAAGQTWEDPVLAEWPEDDYRLFCGDLGNEVNDDVLSKAFS 144
RS V +KA K R + A +T+E PVL R++ +L EV++ L + FS
Sbjct: 177 GRSLVVNKASPKGSRPERTERAPRTFE-PVL--------RIYVANLAWEVDNSRLEQVFS 227
Query: 145 RFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALKEMNGKYVGNRPIKL 196
ARVV D+ TG+++G+GFV+ ++ ++ A+ ++G+ + R I++
Sbjct: 228 EHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRV 279
>Medtr4g036415.1 | splicing factor-like protein | HC |
chr4:13104578-13109685 | 20130731
Length = 767
Score = 51.2 bits (121), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 121 DDYRLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAA 180
DD L+ G L + DD L + F +F +A+V++D+ TG +KGYGFV +A+ A
Sbjct: 449 DDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRITGLSKGYGFVKYADITMANNA 508
Query: 181 LKEMNGKYVGNRPIKLR 197
+ MNG + R I +R
Sbjct: 509 IVAMNGYRLEGRTIAVR 525
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 125 LFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALKEM 184
L+ GDL +++D L AFS F + R+ RD +GK+ YG+V+F +P D A++
Sbjct: 12 LYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIEVK 71
Query: 185 NGKYVGNRPIKLRKSKWKER 204
N + + I++ W R
Sbjct: 72 NHSTLNGKAIRVM---WSRR 88
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 115 LAEWPEDDY-RLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFAN 173
++ P+ Y L+ +L ++++ +L + FS F I+ V G +KG+GFV+F N
Sbjct: 180 ISSGPDTRYTNLYMKNLDLDISETLLREKFSSFGKI-ISLAVAKDSNGMSKGFGFVNFDN 238
Query: 174 PADLAAALKEMNGKYVGNRPIKLRKSKWKERTDYEALEKQKNQLHKKPKLPRKG 227
P D A++ MNG +G++ + + +++ K + + L +Q + K+ L KG
Sbjct: 239 PEDAKRAMETMNGLQLGSKILYVARAQKKAERE-QILHQQFEEKRKEQVLKYKG 291
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 50.8 bits (120), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 125 LFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALKEM 184
L+ +L +ND+ L + FS F + +V+ D G +KG+GFV+F+ + + A+ M
Sbjct: 211 LYLKNLDESINDEKLKEMFSEFGTITSCKVMFDAH-GHSKGFGFVAFSTSEEASKAINGM 269
Query: 185 NGKYVGNRPIKLRKSKWKE--RTDYEALEKQKN 215
+GK +G +P+ + ++ KE +T +A Q N
Sbjct: 270 SGKIIGQKPLYVVVAQRKEDRKTRLQAQFSQIN 302
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 52/82 (63%)
Query: 124 RLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALKE 183
+LF G + +++ L +AFSR+ AR++ D+ TG+++G+GF++F + + ++A++
Sbjct: 43 KLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 102
Query: 184 MNGKYVGNRPIKLRKSKWKERT 205
++G+ + R +++ + + R
Sbjct: 103 LDGQDLHGRRVRVNYANERPRV 124
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Query: 97 KKKAVPRKAAGQTWEDPVLAEWP----EDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNIA 152
K + R+ A Q+ + PV + +LF G L V+D L AF+ + A
Sbjct: 6 KIGNLLRQGATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEA 65
Query: 153 RVVRDKRTGKTKGYGFVSFANPADLAAALKEMNGKYV 189
RV+ D+ TG+++G+GFV+F + +AL M+G+ V
Sbjct: 66 RVITDRETGRSRGFGFVNFTSEESATSALS-MDGQVV 101
>Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 402
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 124 RLFCGDLG---NEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAA 180
R+F G L EV L +AF SF+I VRDK TG +KGYGF + +PA A
Sbjct: 179 RIFVGGLPYYFTEVQMRELLQAFGPLRSFDI---VRDKETGNSKGYGFCIYQDPAVTDIA 235
Query: 181 LKEMNGKYVGNRPIKLRKS 199
+NG +G++ + +R++
Sbjct: 236 CAALNGLKMGDKTLTVRRA 254
>Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 359
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 124 RLFCGDLG---NEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAA 180
R+F G L EV L +AF SF+I VRDK TG +KGYGF + +PA A
Sbjct: 136 RIFVGGLPYYFTEVQMRELLQAFGPLRSFDI---VRDKETGNSKGYGFCIYQDPAVTDIA 192
Query: 181 LKEMNGKYVGNRPIKLRKS 199
+NG +G++ + +R++
Sbjct: 193 CAALNGLKMGDKTLTVRRA 211
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 124 RLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALKE 183
++F G L E D L + F +F A V+ D+ TGK+KGYGFV+F +P A +
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 184 MNGKYVGNR 192
N G R
Sbjct: 87 PNPMIDGRR 95
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 124 RLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALKE 183
++F G L E D L + F +F A V+ D+ TGK+KGYGFV+F +P A +
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 184 MNGKYVGNR 192
N G R
Sbjct: 87 PNPMIDGRR 95
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 125 LFCGDLGNEVNDDVLSKAFSRFPSF-NIARVVRDKRTGKTKGYGFVSFANPADLAAALKE 183
LF G+L +V++ +L FS F +++RD TG ++G+GF+S+ + +A++
Sbjct: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 173
Query: 184 MNGKYVGNRPIKLRKSKWKE 203
MNG+Y+ NR I + + K+
Sbjct: 174 MNGQYLCNRQITVSYAYKKD 193
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 124 RLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALKE 183
++F G L E D L + F +F A V+ D+ TGK+KGYGFV+F +P A +
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 184 MNGKYVGNR 192
N G R
Sbjct: 87 PNPMIDGRR 95
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 124 RLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALKE 183
++F G L E D L + F +F A V+ D+ TGK+KGYGFV+F +P A +
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 184 MNGKYVGNR 192
N G R
Sbjct: 87 PNPMIDGRR 95
>Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475903-3485643 | 20130731
Length = 522
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 124 RLFCGDLG---NEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAA 180
R+F G L EV L +AF SF+I VRDK TG +KGYGF + +PA A
Sbjct: 299 RIFVGGLPYYFTEVQMRELLQAFGPLRSFDI---VRDKETGNSKGYGFCIYQDPAVTDIA 355
Query: 181 LKEMNGKYVGNRPIKLRKS 199
+NG +G++ + +R++
Sbjct: 356 CAALNGLKMGDKTLTVRRA 374
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 120 EDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAA 179
E LF L + L +AF +F ARVV D+ +G +KG+GFV +A D A
Sbjct: 48 EPSTNLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAK 107
Query: 180 ALKEMNGKYV 189
++ M+GK++
Sbjct: 108 GIEGMDGKFL 117
>Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475909-3485643 | 20130731
Length = 507
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 124 RLFCGDLG---NEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAA 180
R+F G L EV L +AF SF+I VRDK TG +KGYGF + +PA A
Sbjct: 284 RIFVGGLPYYFTEVQMRELLQAFGPLRSFDI---VRDKETGNSKGYGFCIYQDPAVTDIA 340
Query: 181 LKEMNGKYVGNRPIKLRKS 199
+NG +G++ + +R++
Sbjct: 341 CAALNGLKMGDKTLTVRRA 359
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 123 YRLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALK 182
Y+++ G+L V D L K FS + A+V R T K+ G+GFV+F++ D+ AA+
Sbjct: 159 YKVYVGNLAKNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAIS 218
Query: 183 EMNGKYVGNRPIKLRKS 199
N + + I++ K+
Sbjct: 219 SFNNALLEGQKIRVNKA 235
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 72 IITPEALESVKAAIARSDVEHKADTKKKAVPRKAAGQTWEDPVLAEWPEDDYRLFCGDLG 131
+I+P L S +++ S + T + GQ AE P LF +
Sbjct: 305 MISPRPLNSPPGSVSPSGGNGNSATSSGSSKNSGGGQ-------AEGPPGA-NLFIYHIP 356
Query: 132 NEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALKEMNGKYVGN 191
E D L+ AF F A+V DK TG +K +GFVS+ +P +A+ MNG +G
Sbjct: 357 QEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGCQLGG 416
Query: 192 RPIKLR 197
+ +K++
Sbjct: 417 KKLKVQ 422
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 72 IITPEALESVKAAIARSDVEHKADTKKKAVPRKAAGQTWEDPVLAEWPEDDYRLFCGDLG 131
+I+P L S +++ S + T + GQ AE P LF +
Sbjct: 306 MISPRPLNSPPGSVSPSGGNGNSATSSGSSKNSGGGQ-------AEGPPGA-NLFIYHIP 357
Query: 132 NEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALKEMNGKYVGN 191
E D L+ AF F A+V DK TG +K +GFVS+ +P +A+ MNG +G
Sbjct: 358 QEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGCQLGG 417
Query: 192 RPIKLR 197
+ +K++
Sbjct: 418 KKLKVQ 423
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 125 LFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPADLAAALK-- 182
L+ GDL ++V D L KAFS F + ARV +D TGK+ YG+V+ ++ + A++
Sbjct: 17 LYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIELK 76
Query: 183 ---EMNGKYV 189
+NGK +
Sbjct: 77 NHSSLNGKVI 86
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 19/132 (14%)
Query: 66 FERDAQIITPEALESVKAAI---------ARSDVEHKADTKKKAVPR-KAAGQTWEDPVL 115
R +T +E ++A+ RS V +KA K R + A +T+E PVL
Sbjct: 148 LSRGFGFVTMSTVEEAESAVEKFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFE-PVL 206
Query: 116 AEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNIARVVRDKRTGKTKGYGFVSFANPA 175
R++ +L EV++ L + FS ARVV D+ TG+++G+GFV+ ++
Sbjct: 207 --------RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDET 258
Query: 176 DLAAALKEMNGK 187
++ A+ ++G+
Sbjct: 259 EMNDAIAALDGQ 270