Miyakogusa Predicted Gene

Lj5g3v1351980.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1351980.1 Non Characterized Hit- tr|I1M230|I1M230_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,42.61,2e-18,seg,NULL; no description,Helix-loop-helix domain;
coiled-coil,NULL,gene.g61602.t1.1
         (136 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g078350.1 | helix loop helix DNA-binding domain protein | ...   144   2e-35
Medtr2g090425.1 | helix loop helix DNA-binding domain protein | ...   136   7e-33
Medtr2g090440.1 | helix loop helix DNA-binding domain protein | ...   135   8e-33
Medtr2g090480.1 | helix loop helix DNA-binding domain protein | ...   129   1e-30
Medtr2g090500.1 | hypothetical protein | LC | chr2:38618879-3861...   108   2e-24
Medtr2g013920.1 | helix loop helix DNA-binding domain protein | ...    84   3e-17

>Medtr4g078350.1 | helix loop helix DNA-binding domain protein | HC
           | chr4:30195137-30195963 | 20130731
          Length = 208

 Score =  144 bits (363), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/136 (57%), Positives = 89/136 (65%), Gaps = 7/136 (5%)

Query: 1   MKILYSKLNSLLPNYNPKE-AVPLPDQIDEAINYIKSLXXXXXXXXXXXXSLGXXXXXXX 59
           MKILYSKLNSLLPNYNPKE  + LPDQ+DEAINYIKSL             L        
Sbjct: 30  MKILYSKLNSLLPNYNPKELPLALPDQVDEAINYIKSLEANVQMAMEKKERL-----LAG 84

Query: 60  XXXXXXXXXXXXXXXPQLEVHETGSSLEVVLTCGLDNQFIFYEIIRILQEENIDVRSANS 119
                          P  E+HE GSSL+++LTCGLDNQFIFYEIIR+L EEN+D+RS NS
Sbjct: 85  KNKRSREYCLDLPKSPCFEIHEIGSSLQIILTCGLDNQFIFYEIIRVLHEENVDIRSVNS 144

Query: 120 SMAGD-SMLHVVHAEV 134
           S  GD S+LHVVHAE+
Sbjct: 145 SKVGDNSLLHVVHAEI 160


>Medtr2g090425.1 | helix loop helix DNA-binding domain protein | LC
           | chr2:38561453-38566915 | 20130731
          Length = 327

 Score =  136 bits (342), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 70/135 (51%), Positives = 89/135 (65%), Gaps = 1/135 (0%)

Query: 1   MKILYSKLNSLLPNYNPKE-AVPLPDQIDEAINYIKSLXXXXXXXXXXXXSLGXXXXXXX 59
           MKIL+SKLNSLLP+YN KE A+PLPDQ+DEAINYIKSL            SL        
Sbjct: 29  MKILFSKLNSLLPSYNQKELALPLPDQVDEAINYIKSLEINIKLAKEKKESLMGNKKRSR 88

Query: 60  XXXXXXXXXXXXXXXPQLEVHETGSSLEVVLTCGLDNQFIFYEIIRILQEENIDVRSANS 119
                          P++E+HE G +L+V++TCG+D  FIF EI+RIL EEN+DV S+NS
Sbjct: 89  GGWSSSYGAKGSIELPKIEIHEIGPTLQVIVTCGVDEHFIFCEIMRILHEENVDVISSNS 148

Query: 120 SMAGDSMLHVVHAEV 134
           S+AGDS+LH V A++
Sbjct: 149 SLAGDSLLHTVLAQI 163


>Medtr2g090440.1 | helix loop helix DNA-binding domain protein | LC
           | chr2:38580669-38583058 | 20130731
          Length = 217

 Score =  135 bits (341), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 69/135 (51%), Positives = 90/135 (66%), Gaps = 4/135 (2%)

Query: 1   MKILYSKLNSLLPNYNPKE-AVPLPDQIDEAINYIKSLXXXXXXXXXXXXSLGXXXXXXX 59
           MKIL+S LNS+LP+YNPKE A+PLPDQ+DEAINYIKSL            SL        
Sbjct: 29  MKILFSNLNSILPSYNPKELALPLPDQVDEAINYIKSLETNLKGAKEKKESL---MGNKK 85

Query: 60  XXXXXXXXXXXXXXXPQLEVHETGSSLEVVLTCGLDNQFIFYEIIRILQEENIDVRSANS 119
                          P++E+HE GS+L+V++TCG+D  FIF EI+RIL EEN++V S+NS
Sbjct: 86  RSRGGYGAKGSIIKLPKIEIHEMGSTLQVIVTCGVDEHFIFCEIMRILHEENVEVISSNS 145

Query: 120 SMAGDSMLHVVHAEV 134
           S+ GDS+LH VHA++
Sbjct: 146 SLTGDSLLHTVHAQI 160


>Medtr2g090480.1 | helix loop helix DNA-binding domain protein | LC
           | chr2:38605874-38608239 | 20130731
          Length = 219

 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/135 (48%), Positives = 87/135 (64%), Gaps = 2/135 (1%)

Query: 1   MKILYSKLNSLLPNYNPKE-AVPLPDQIDEAINYIKSLXXXXXXXXXXXXSLGXXXXXXX 59
           MKIL+S LNSLLP+YNPKE A+PLPDQ+DEAINYIK L            SL        
Sbjct: 29  MKILFSNLNSLLPSYNPKELALPLPDQVDEAINYIKRLETNIKLAKEKKESL-MGNKRSR 87

Query: 60  XXXXXXXXXXXXXXXPQLEVHETGSSLEVVLTCGLDNQFIFYEIIRILQEENIDVRSANS 119
                          P++E+HE G +L++++TCG+D  FIF EI+RIL EEN++V S+N+
Sbjct: 88  GDCSSSSGAKGIIKLPKIEIHEMGPTLQIIVTCGVDEHFIFCEIMRILHEENVEVISSNT 147

Query: 120 SMAGDSMLHVVHAEV 134
           S+ G S+LH VHA++
Sbjct: 148 SLTGHSLLHTVHAQI 162


>Medtr2g090500.1 | hypothetical protein | LC |
           chr2:38618879-38616410 | 20130731
          Length = 230

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 73/117 (62%), Gaps = 3/117 (2%)

Query: 18  KEAVPLPDQIDEAINYIKSLXXXXXXXXXXXXSLGXXXXXXXXXXXXXXXXXXXXXXPQL 77
           +EA+PLPDQ+DEAINYIKSL            SL                       P++
Sbjct: 60  EEALPLPDQVDEAINYIKSLETNIMLAKEKKESL---MGNKKRSRGGYGAKGSIIKLPKI 116

Query: 78  EVHETGSSLEVVLTCGLDNQFIFYEIIRILQEENIDVRSANSSMAGDSMLHVVHAEV 134
           E+HE G +L+V++TCG+D  FIF EI+RIL EEN++V S+NSS+ GDS+LH VHA++
Sbjct: 117 EIHEMGPTLQVIVTCGVDKHFIFCEIMRILHEENVEVISSNSSLTGDSLLHTVHAQI 173


>Medtr2g013920.1 | helix loop helix DNA-binding domain protein | HC
           | chr2:3826720-3828487 | 20130731
          Length = 174

 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 69/134 (51%), Gaps = 3/134 (2%)

Query: 1   MKILYSKLNSLLPNYNPKEAVPLPDQIDEAINYIKSLXXXXXXXXXXXXSLGXXXXXXXX 60
           MK L  KLNSLLP+   KEA+ +PDQ+ EA NYIK L             L         
Sbjct: 23  MKALCQKLNSLLPHQTSKEAISVPDQLKEATNYIKKLQINLEKMKEKKNFL---LGIQRP 79

Query: 61  XXXXXXXXXXXXXXPQLEVHETGSSLEVVLTCGLDNQFIFYEIIRILQEENIDVRSANSS 120
                         P++++ + G  LEVVL  GL++QF+F E  R+L EE +D+ +A+  
Sbjct: 80  NVNLNRNQKMGLKSPKIKIQQIGLVLEVVLITGLESQFLFSETFRVLHEEGVDIVNASYK 139

Query: 121 MAGDSMLHVVHAEV 134
           +  DS+ H +H +V
Sbjct: 140 VNEDSVFHSIHCQV 153