Miyakogusa Predicted Gene

Lj5g3v1328770.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1328770.1 Non Characterized Hit- tr|I1JRT7|I1JRT7_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,41.73,0.0000000000001,AT_hook,AT hook, DNA-binding motif;
seg,NULL,NODE_49289_length_370_cov_96.762161.path2.1
         (121 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g116320.3 | AT hook motif DNA-binding family protein | HC ...    55   2e-08
Medtr7g116320.1 | AT hook motif DNA-binding family protein | HC ...    54   4e-08

>Medtr7g116320.3 | AT hook motif DNA-binding family protein | HC |
           chr7:47961408-47966056 | 20130731
          Length = 274

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 40/89 (44%), Gaps = 13/89 (14%)

Query: 46  PEKKKRGRPRKYQSPEEXXXXXXXXXXX-------------XXXXXXXXXYQPPIHTKKP 92
           P K+KRGRPRKY +PE+                                       TKK 
Sbjct: 72  PAKRKRGRPRKYGTPEQALAAKKASTSSFSPTPPTLDTTTNNKNTHSFSPSSSSFTTKKS 131

Query: 93  RSFDLGNAGQSFTPHIVPVADGEDVGQKI 121
            S  LGNAGQ F+ H++ VA GEDVGQKI
Sbjct: 132 HSLSLGNAGQGFSAHVIAVAAGEDVGQKI 160


>Medtr7g116320.1 | AT hook motif DNA-binding family protein | HC |
           chr7:47961413-47966098 | 20130731
          Length = 367

 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 40/89 (44%), Gaps = 13/89 (14%)

Query: 46  PEKKKRGRPRKYQSPEEXXXXXXXXXXX-------------XXXXXXXXXYQPPIHTKKP 92
           P K+KRGRPRKY +PE+                                       TKK 
Sbjct: 72  PAKRKRGRPRKYGTPEQALAAKKASTSSFSPTPPTLDTTTNNKNTHSFSPSSSSFTTKKS 131

Query: 93  RSFDLGNAGQSFTPHIVPVADGEDVGQKI 121
            S  LGNAGQ F+ H++ VA GEDVGQKI
Sbjct: 132 HSLSLGNAGQGFSAHVIAVAAGEDVGQKI 160