Miyakogusa Predicted Gene

Lj5g3v1315660.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1315660.1 Non Characterized Hit- tr|K4AJZ1|K4AJZ1_SETIT
Uncharacterized protein (Fragment) OS=Setaria italica
,65.67,1e-16,ARE1-LIKE PROTEIN,NULL; SUPPRESSOR OF ACTIN MUTATIONS
2/VACUOLAR PROTEIN SORTING 52,Vps52/Sac2,FS355688.path1.1
         (67 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g079770.1 | vacuolar protein sorting-associated protein | ...   134   1e-32

>Medtr1g079770.1 | vacuolar protein sorting-associated protein | HC
           | chr1:35431318-35442002 | 20130731
          Length = 699

 Score =  134 bits (338), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/67 (97%), Positives = 65/67 (97%)

Query: 1   MHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDCIKRIVGGSALNKDLVSISSIMYEI 60
           MHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSD IKRI GGSALNKDLVSISSIMYEI
Sbjct: 633 MHKDVITSFSNFLCGMEILRAALTQLLLYYTRLSDSIKRIPGGSALNKDLVSISSIMYEI 692

Query: 61  RKYSRTF 67
           RKYSRTF
Sbjct: 693 RKYSRTF 699