Miyakogusa Predicted Gene

Lj5g3v1314600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1314600.1 Non Characterized Hit- tr|C6TFN8|C6TFN8_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2
S,88.66,0,S1,Ribosomal protein S1, RNA-binding domain; EXOSC1,Exosome
complex component CSL4; ECR1_N,Exosome c,CUFF.55140.1
         (196 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g079767.1 | nucleic acid-binding, OB-fold-like protein | H...   338   2e-93

>Medtr1g079767.1 | nucleic acid-binding, OB-fold-like protein | HC |
           chr1:35428282-35424462 | 20130731
          Length = 283

 Score =  338 bits (867), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 160/192 (83%), Positives = 175/192 (91%)

Query: 3   EDKAEMVTPGEVLGRSSDVKPGRGAYTAAHNKTVYASLTGFRRTTPPEPDSPDQRPTVEV 62
           E + +MVTPGEV+G++ DVK GRG YT+ HN TVYASLTGFR T PP  DSPDQRP VEV
Sbjct: 2   EAERDMVTPGEVIGKTHDVKAGRGTYTSTHNNTVYASLTGFRHTIPPASDSPDQRPIVEV 61

Query: 63  TGHKAHGPVPQPGSVVIARVTKVMARSASADIMCVGPKSVREKFTGIIRQQDVRATEIDK 122
           TGHKAHGPVP+PGSVVI RVTKVM + A ADIMCVG KSVREKFTG+IRQQDVRATEIDK
Sbjct: 62  TGHKAHGPVPEPGSVVIVRVTKVMTKIAEADIMCVGQKSVREKFTGVIRQQDVRATEIDK 121

Query: 123 VEMHLSFRPGDIVKALVLSLGDARAYFLSTAKNELGVVSAESTAGATMVPISWTEMQCPL 182
           V+MHLSFRPGDIVKALVLSLG+ARAYFL+TAKNELGVVSAESTAGAT+VPISWTEMQCPL
Sbjct: 122 VDMHLSFRPGDIVKALVLSLGNARAYFLTTAKNELGVVSAESTAGATLVPISWTEMQCPL 181

Query: 183 TGQIEQRKVAKV 194
           +GQIEQRKVAK+
Sbjct: 182 SGQIEQRKVAKL 193