Miyakogusa Predicted Gene

Lj5g3v1301250.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1301250.1 tr|B9IQ06|B9IQ06_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_780402 PE=4
SV=1,43.14,2e-16,seg,NULL,CUFF.55120.1
         (105 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g078420.1 | transmembrane protein, putative | HC | chr1:35...   139   8e-34
Medtr1g078420.2 | transmembrane protein, putative | HC | chr1:35...   138   9e-34

>Medtr1g078420.1 | transmembrane protein, putative | HC |
           chr1:35127416-35131133 | 20130731
          Length = 718

 Score =  139 bits (349), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 67/102 (65%), Positives = 77/102 (75%)

Query: 1   MEVLVLXXXXXXXXXXXXXXXNIICPSQELVFDEGNVWKQINAIRKIIGYEGTAQASCAD 60
           MEVLV                NI+CPS+E+ F+E N+WKQI+ IR IIGYEGT QASCAD
Sbjct: 613 MEVLVSSIELESRSSECSAEKNIVCPSEEVSFNEENIWKQIHVIRTIIGYEGTIQASCAD 672

Query: 61  ELKALYIFTGVEPPTFLKQNLCDPAEINEKLHFLMSIVGIKS 102
           ELKALYIFTGVEPPTF+K+N  D  EINEKLHFLMSIVG+K+
Sbjct: 673 ELKALYIFTGVEPPTFVKENPFDLVEINEKLHFLMSIVGVKT 714


>Medtr1g078420.2 | transmembrane protein, putative | HC |
           chr1:35127416-35131133 | 20130731
          Length = 600

 Score =  138 bits (348), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 67/102 (65%), Positives = 77/102 (75%)

Query: 1   MEVLVLXXXXXXXXXXXXXXXNIICPSQELVFDEGNVWKQINAIRKIIGYEGTAQASCAD 60
           MEVLV                NI+CPS+E+ F+E N+WKQI+ IR IIGYEGT QASCAD
Sbjct: 495 MEVLVSSIELESRSSECSAEKNIVCPSEEVSFNEENIWKQIHVIRTIIGYEGTIQASCAD 554

Query: 61  ELKALYIFTGVEPPTFLKQNLCDPAEINEKLHFLMSIVGIKS 102
           ELKALYIFTGVEPPTF+K+N  D  EINEKLHFLMSIVG+K+
Sbjct: 555 ELKALYIFTGVEPPTFVKENPFDLVEINEKLHFLMSIVGVKT 596