Miyakogusa Predicted Gene

Lj5g3v1301180.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1301180.1 Non Characterized Hit- tr|H3GQY3|H3GQY3_PHYRM
Uncharacterized protein OS=Phytophthora ramorum
GN=fge,27.66,0.00006,no description,NULL; R3H domain,NULL; Putative
single-stranded nucleic acids-bindi,Single-stranded n,CUFF.55118.1
         (321 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g078380.2 | R3H domain protein | HC | chr1:35104467-351089...   514   e-146
Medtr1g078380.3 | R3H domain protein | HC | chr1:35104636-351083...   498   e-141
Medtr1g078380.1 | R3H domain protein | HC | chr1:35104943-351083...   498   e-141

>Medtr1g078380.2 | R3H domain protein | HC | chr1:35104467-35108949
           | 20130731
          Length = 318

 Score =  514 bits (1325), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 256/321 (79%), Positives = 280/321 (87%), Gaps = 3/321 (0%)

Query: 1   MSMTQFAMVEELAFLVKDNLPCKHLVLTMEEVLVNFLEADDTSSDGILELEPMNSYNRLL 60
           MSMTQFAMVEELAFLVKDNLPCKHLVLTMEE+LVNFLEA+DTSSDGILELEPMNSYNRLL
Sbjct: 1   MSMTQFAMVEELAFLVKDNLPCKHLVLTMEELLVNFLEAEDTSSDGILELEPMNSYNRLL 60

Query: 61  LHRLAEIFGFAHESVGEGDDRHLILERCPDTSMPSILVSDILWKYDEPQSLMESHDSHQI 120
           LHRLAEIFGFAHESVGEG+DRHLILERCPDTS+P ILVSDIL  YDEPQSL  SH   QI
Sbjct: 61  LHRLAEIFGFAHESVGEGEDRHLILERCPDTSIPPILVSDILGTYDEPQSLFASH---QI 117

Query: 121 LRRKEASPVSQTNAASIQQSLEERKAAYFAARERIFSLSLEEGKEPGEQKPRTVPVVARR 180
           LRRKEASPVSQTN  SIQQ+LEERKAAY  ARERIFS++LE+ KEP EQKPR+VPVVARR
Sbjct: 118 LRRKEASPVSQTNTTSIQQTLEERKAAYLLARERIFSMNLEDAKEPNEQKPRSVPVVARR 177

Query: 181 MIAHALGQRIHTRNQNDLVSDSMKDKVLTDELNGQDKTSEKSNLMKDSEESLHLRRNSNS 240
           MIAHALGQRI+T+N N+LV+D   ++   DELN QDK SEKS+L KD EESL LR+NSNS
Sbjct: 178 MIAHALGQRINTKNPNELVNDGTNNRGFLDELNAQDKNSEKSDLAKDFEESLSLRKNSNS 237

Query: 241 KIRNTGSSNAGSHHKRNDQTPVEKHLPQFSPNRKQGQSVSKEDMKKENLGAAKRMFAHAL 300
           + RNTGSSNA   +KRNDQTPV+K  P  S + KQGQSVSKE M+KE+LGAAKRMFAHAL
Sbjct: 238 RTRNTGSSNAAPLNKRNDQTPVDKGSPPLSQDGKQGQSVSKECMRKEHLGAAKRMFAHAL 297

Query: 301 GVHSGKDGSVARNRNGEINKN 321
           GVHS KDGSV R+RNGE  KN
Sbjct: 298 GVHSVKDGSVPRSRNGENTKN 318


>Medtr1g078380.3 | R3H domain protein | HC | chr1:35104636-35108332
           | 20130731
          Length = 320

 Score =  498 bits (1282), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/313 (79%), Positives = 272/313 (86%), Gaps = 3/313 (0%)

Query: 9   VEELAFLVKDNLPCKHLVLTMEEVLVNFLEADDTSSDGILELEPMNSYNRLLLHRLAEIF 68
           VEELAFLVKDNLPCKHLVLTMEE+LVNFLEA+DTSSDGILELEPMNSYNRLLLHRLAEIF
Sbjct: 11  VEELAFLVKDNLPCKHLVLTMEELLVNFLEAEDTSSDGILELEPMNSYNRLLLHRLAEIF 70

Query: 69  GFAHESVGEGDDRHLILERCPDTSMPSILVSDILWKYDEPQSLMESHDSHQILRRKEASP 128
           GFAHESVGEG+DRHLILERCPDTS+P ILVSDIL  YDEPQSL  SH   QILRRKEASP
Sbjct: 71  GFAHESVGEGEDRHLILERCPDTSIPPILVSDILGTYDEPQSLFASH---QILRRKEASP 127

Query: 129 VSQTNAASIQQSLEERKAAYFAARERIFSLSLEEGKEPGEQKPRTVPVVARRMIAHALGQ 188
           VSQTN  SIQQ+LEERKAAY  ARERIFS++LE+ KEP EQKPR+VPVVARRMIAHALGQ
Sbjct: 128 VSQTNTTSIQQTLEERKAAYLLARERIFSMNLEDAKEPNEQKPRSVPVVARRMIAHALGQ 187

Query: 189 RIHTRNQNDLVSDSMKDKVLTDELNGQDKTSEKSNLMKDSEESLHLRRNSNSKIRNTGSS 248
           RI+T+N N+LV+D   ++   DELN QDK SEKS+L KD EESL LR+NSNS+ RNTGSS
Sbjct: 188 RINTKNPNELVNDGTNNRGFLDELNAQDKNSEKSDLAKDFEESLSLRKNSNSRTRNTGSS 247

Query: 249 NAGSHHKRNDQTPVEKHLPQFSPNRKQGQSVSKEDMKKENLGAAKRMFAHALGVHSGKDG 308
           NA   +KRNDQTPV+K  P  S + KQGQSVSKE M+KE+LGAAKRMFAHALGVHS KDG
Sbjct: 248 NAAPLNKRNDQTPVDKGSPPLSQDGKQGQSVSKECMRKEHLGAAKRMFAHALGVHSVKDG 307

Query: 309 SVARNRNGEINKN 321
           SV R+RNGE  KN
Sbjct: 308 SVPRSRNGENTKN 320


>Medtr1g078380.1 | R3H domain protein | HC | chr1:35104943-35108332
           | 20130731
          Length = 332

 Score =  498 bits (1281), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/313 (79%), Positives = 272/313 (86%), Gaps = 3/313 (0%)

Query: 9   VEELAFLVKDNLPCKHLVLTMEEVLVNFLEADDTSSDGILELEPMNSYNRLLLHRLAEIF 68
           VEELAFLVKDNLPCKHLVLTMEE+LVNFLEA+DTSSDGILELEPMNSYNRLLLHRLAEIF
Sbjct: 23  VEELAFLVKDNLPCKHLVLTMEELLVNFLEAEDTSSDGILELEPMNSYNRLLLHRLAEIF 82

Query: 69  GFAHESVGEGDDRHLILERCPDTSMPSILVSDILWKYDEPQSLMESHDSHQILRRKEASP 128
           GFAHESVGEG+DRHLILERCPDTS+P ILVSDIL  YDEPQSL  SH   QILRRKEASP
Sbjct: 83  GFAHESVGEGEDRHLILERCPDTSIPPILVSDILGTYDEPQSLFASH---QILRRKEASP 139

Query: 129 VSQTNAASIQQSLEERKAAYFAARERIFSLSLEEGKEPGEQKPRTVPVVARRMIAHALGQ 188
           VSQTN  SIQQ+LEERKAAY  ARERIFS++LE+ KEP EQKPR+VPVVARRMIAHALGQ
Sbjct: 140 VSQTNTTSIQQTLEERKAAYLLARERIFSMNLEDAKEPNEQKPRSVPVVARRMIAHALGQ 199

Query: 189 RIHTRNQNDLVSDSMKDKVLTDELNGQDKTSEKSNLMKDSEESLHLRRNSNSKIRNTGSS 248
           RI+T+N N+LV+D   ++   DELN QDK SEKS+L KD EESL LR+NSNS+ RNTGSS
Sbjct: 200 RINTKNPNELVNDGTNNRGFLDELNAQDKNSEKSDLAKDFEESLSLRKNSNSRTRNTGSS 259

Query: 249 NAGSHHKRNDQTPVEKHLPQFSPNRKQGQSVSKEDMKKENLGAAKRMFAHALGVHSGKDG 308
           NA   +KRNDQTPV+K  P  S + KQGQSVSKE M+KE+LGAAKRMFAHALGVHS KDG
Sbjct: 260 NAAPLNKRNDQTPVDKGSPPLSQDGKQGQSVSKECMRKEHLGAAKRMFAHALGVHSVKDG 319

Query: 309 SVARNRNGEINKN 321
           SV R+RNGE  KN
Sbjct: 320 SVPRSRNGENTKN 332