Miyakogusa Predicted Gene

Lj5g3v1260890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1260890.1 tr|D7KID0|D7KID0_ARALL Ubiquitin
carboxyl-terminal hydrolase OS=Arabidopsis lyrata subsp. lyrata
GN=,40.82,6e-19, ,CUFF.55099.1
         (169 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g077980.1 | ubiquitin carboxyl-terminal hydrolase-like pro...   246   1e-65
Medtr1g077980.2 | ubiquitin carboxyl-terminal hydrolase-like pro...   246   1e-65

>Medtr1g077980.1 | ubiquitin carboxyl-terminal hydrolase-like
           protein | HC | chr1:34854787-34865759 | 20130731
          Length = 922

 Score =  246 bits (627), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 119/157 (75%), Positives = 135/157 (85%), Gaps = 2/157 (1%)

Query: 13  LDRMKGGERKLFGTPLVTYLVENPQYGADIEESVHKLLAPLRKAYSSTKSHDDDEKENGF 72
           LD  KGGERK+FGTPLVTYL E+PQ GA+IE  VH++LAPLRKA+SSTKSH+   KE GF
Sbjct: 602 LDSGKGGERKIFGTPLVTYLEEDPQCGANIEPYVHRMLAPLRKAHSSTKSHEG--KETGF 659

Query: 73  ISAGSDEQSNISNTQSEPRNPTIGSREQEGTSSGESSFQLVLTNERCLSCEPFDRASFIK 132
           IS GSDEQS+I N+ SEPRNP + +REQEGTS GESSFQLVLTNE C SCEP D+AS IK
Sbjct: 660 ISGGSDEQSSICNSHSEPRNPALCTREQEGTSCGESSFQLVLTNEGCFSCEPIDKASVIK 719

Query: 133 PSQHIRVFLDWTDKEHELYDASYLRDLPEVHKTGFTV 169
           PS HI+VF+DWT+KE+ELYDASYL DLPEVHKTGFTV
Sbjct: 720 PSAHIKVFVDWTEKEYELYDASYLSDLPEVHKTGFTV 756


>Medtr1g077980.2 | ubiquitin carboxyl-terminal hydrolase-like
           protein | HC | chr1:34854807-34865759 | 20130731
          Length = 922

 Score =  246 bits (627), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 119/157 (75%), Positives = 135/157 (85%), Gaps = 2/157 (1%)

Query: 13  LDRMKGGERKLFGTPLVTYLVENPQYGADIEESVHKLLAPLRKAYSSTKSHDDDEKENGF 72
           LD  KGGERK+FGTPLVTYL E+PQ GA+IE  VH++LAPLRKA+SSTKSH+   KE GF
Sbjct: 602 LDSGKGGERKIFGTPLVTYLEEDPQCGANIEPYVHRMLAPLRKAHSSTKSHEG--KETGF 659

Query: 73  ISAGSDEQSNISNTQSEPRNPTIGSREQEGTSSGESSFQLVLTNERCLSCEPFDRASFIK 132
           IS GSDEQS+I N+ SEPRNP + +REQEGTS GESSFQLVLTNE C SCEP D+AS IK
Sbjct: 660 ISGGSDEQSSICNSHSEPRNPALCTREQEGTSCGESSFQLVLTNEGCFSCEPIDKASVIK 719

Query: 133 PSQHIRVFLDWTDKEHELYDASYLRDLPEVHKTGFTV 169
           PS HI+VF+DWT+KE+ELYDASYL DLPEVHKTGFTV
Sbjct: 720 PSAHIKVFVDWTEKEYELYDASYLSDLPEVHKTGFTV 756