Miyakogusa Predicted Gene

Lj5g3v1259870.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1259870.2 Non Characterized Hit- tr|I1NIH7|I1NIH7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.25509
PE,64.04,0,seg,NULL; PHD zinc finger,Zinc finger, PHD-type; no
description,Zinc finger, RING/FYVE/PHD-type; OS0,CUFF.55160.2
         (1172 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g077940.1 | RING/FYVE/PHD zinc finger protein, putative | ...  1321   0.0  
Medtr4g035550.1 | PHD finger plant-like protein | HC | chr4:1225...    63   2e-09
Medtr1g076990.3 | PHD finger plant-like protein | HC | chr1:3435...    56   2e-07
Medtr1g076990.2 | PHD finger plant-like protein | HC | chr1:3435...    55   3e-07
Medtr1g076990.1 | PHD finger plant-like protein | HC | chr1:3435...    55   3e-07
Medtr5g040700.1 | PHD finger protein MALE sterility-like protein...    52   4e-06

>Medtr1g077940.1 | RING/FYVE/PHD zinc finger protein, putative | HC |
            chr1:34844507-34836799 | 20130731
          Length = 1176

 Score = 1321 bits (3419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 734/1220 (60%), Positives = 828/1220 (67%), Gaps = 92/1220 (7%)

Query: 1    MKGRSHRPQSSDPPDDWVDGSWTVDCVCGVTFDDGEEMVKCDECGVWVHTRCSRYVKGDD 60
            MKGRS+RP    PPD+WVDGSWTVDC+CGV FDDGEEMVKCDEC VWVHTRCSRYVKGDD
Sbjct: 1    MKGRSNRPMDP-PPDEWVDGSWTVDCICGVNFDDGEEMVKCDECDVWVHTRCSRYVKGDD 59

Query: 61   TFSCDKCXXXXXXXXXXXXXXXXXXRVDRITEETEVAQLLIELPTKTMSMEKXXXXXXXX 120
             F+CDKC                        EETEVAQ L+ELPTK++ +E+        
Sbjct: 60   MFACDKCKAKNNRVGAENN-----------IEETEVAQFLVELPTKSIPLERRGNGNRSN 108

Query: 121  XXXXXXXXXKVVASRSRRPFKLWAEKPMEEKVHVQGIPGGDPSLFAGKAVPSIFGPQLWK 180
                       VAS SRRPFKLW + PMEE+VHVQGIPGGDP LF GK V SIFGPQLWK
Sbjct: 109  GIASSR-----VASCSRRPFKLWTDIPMEERVHVQGIPGGDPELFEGKTVSSIFGPQLWK 163

Query: 181  CTGYVPKKFNFQYREFPYW---DDEKKNEGTQEN-DNGAGVLFSFSKETSAIM-NSPVAA 235
            CTGYVPKKF+FQYREFP W   ++E  ++G QEN DNGAGVL S SKE + ++  SPV A
Sbjct: 164  CTGYVPKKFSFQYREFPSWYENENENNDKGLQENEDNGAGVLLSLSKEVNNMLAKSPVTA 223

Query: 236  LVDMRSSHGKAGSFKDMGMGKFGRGEDAPRVQSTMKKESGWLRPLVVHSSKKRKEDFANS 295
            LVD  S  GK G FK+ G GK G+ +  PRV + +KKE   LRP VVHSSK+RK++    
Sbjct: 224  LVDTGSRQGKKG-FKESGTGKLGK-DHMPRVHNAVKKERNLLRPFVVHSSKRRKDEL--- 278

Query: 296  NSKDKSGKK-RVRTSDK-------------DFDPRRRSS--------------------- 320
             SKD+SGKK RV+TSD+             D DP+RRSS                     
Sbjct: 279  -SKDRSGKKKRVKTSDREEVDIKKRTSDREDVDPKRRSSDREDVHPKRKTSDREDVDHKR 337

Query: 321  ---HSSKPAFPPTRDAKQMEFYEDRGPKILKADTRSLKNKNLKDKVVQEHISND-FTVDT 376
               HSSK AF PT DAKQ+ FY DRGPK+ K D RS+KNKNLKD VVQ+HISND F V T
Sbjct: 338  RTSHSSKAAFTPTCDAKQLAFYGDRGPKVFKDDIRSIKNKNLKDTVVQDHISNDSFAVGT 397

Query: 377  IVEEPSNNLTATEESSEALYPKMARRSLSDGDALAEEKTGRKSVEMSSKTDDAVTSALNH 436
             +E  +NNLT TEESSEALY K  RRS S GD LAEEKTG K +EMSSKTDDAVTS L H
Sbjct: 398  TIEVSNNNLTTTEESSEALYTKKTRRSHSAGDVLAEEKTGNKVLEMSSKTDDAVTSVLKH 457

Query: 437  NCVEIASVKEKDGDCLAAENMDDTLVGRSTESPHREGRCGSASKLMDNQVSQDLACNLRP 496
              +E AS K+K GDCL A N+D+TLV RS  SP  E   GSA + M+ QVSQD+ CN  P
Sbjct: 458  TYLENASAKKKGGDCLEANNLDETLVVRSPMSPQTEDPRGSAPEHMEKQVSQDIDCNQHP 517

Query: 497  CSAKRKVRVKREDDGDNFKLSNFHSSPISDLKINEKPADHSSDIVKVNEAVVPSLSSCKN 556
             S + KV+VKREDD D FK S FH S ISDLK N K +D +SDI KVN+A V +L  C+N
Sbjct: 518  SSGQYKVKVKREDDKDKFKHSKFHFSSISDLKNNGKSSDPTSDIGKVNDAAVLTLPLCEN 577

Query: 557  KVGDVDISSEVAPDDHSNKPKELPGNFCHGKQEVEGSKGSFETLKEFSETXXXXXXXXXX 616
            KVGDV ISSEV PD H+N   ELPGNF HGK EVEGS+GSFET K FSET          
Sbjct: 578  KVGDVGISSEVVPDSHTN---ELPGNFSHGK-EVEGSEGSFETQKGFSETKDGIDSAKNL 633

Query: 617  XXXEALGCLQKMPTCVGKSSPASSTMNSKSLSQNFNSEDAEIQNSFTKQRVMVDCNIPVK 676
               EAL C  KMP  V K+SP SS +N KS SQ+F  ED E  N FTK     D NI +K
Sbjct: 634  SKSEALECQSKMPASVRKTSPTSSIINCKSPSQDFKCEDTETANPFTKHGAKADHNIHIK 693

Query: 677  NESSPHDAAKDENPKKFVRERSKSSLHSNSKGLHSSRSLQNSVSKQAISEARDSVSKQAS 736
            N S  +D A+DE P+K+VRER +SS               +  S  +    ++SV KQA+
Sbjct: 694  NGSCTNDGARDEIPRKYVRERPRSS---------------SKSSLHSSQSTQNSVPKQAN 738

Query: 737  SEARDSVHCSSSKASSGHQTSTNLGSSETNASLHQQKALQVQNKISS-VPPKVEKANQTN 795
             + RDSVHCS SK S GHQT + +GSSETNAS+H QK LQ QNK SS VP K E+ NQTN
Sbjct: 739  PDVRDSVHCSLSKPSLGHQTPSVVGSSETNASMHHQKGLQGQNKTSSLVPQKAERLNQTN 798

Query: 796  IHSSSKSNQNHXXXXXXXXXXXXXMLSDEELALLLHQELNXXXXXXXXXXARNTGSLPQL 855
             HSSSK NQNH             MLSDEELALLLHQELN          AR TGSLPQ 
Sbjct: 799  THSSSKLNQNHTPSLNPSPTLNSSMLSDEELALLLHQELNSSPRVPRVPRARQTGSLPQ- 857

Query: 856  NSTSATSMLMKRTTSAGGKDHYLVSRRKYKDASRDGFCSSREPEDEAK-IEKEKGPSSSD 914
              TSAT+MLMKR  S GGKD+YLVS+RKYKDA+RDGF SSREPEDEAK IE EKG SSSD
Sbjct: 858  TGTSATNMLMKRA-SVGGKDNYLVSKRKYKDATRDGFSSSREPEDEAKRIENEKGQSSSD 916

Query: 915  QRKQNMECVEDTSVKE-GGHASVIASNTITNNVVSATSAIANSSPHSPSEEQSFSLIRNS 973
            QRKQ+   VED SVKE GG A V A+N+ITNNVVS T AIANS   SP E+++ S +RNS
Sbjct: 917  QRKQDTAYVEDASVKEEGGRACVTAANSITNNVVSTTPAIANSGSPSPCEDRNLSSMRNS 976

Query: 974  PRNISDDDTATAGRPVHHTLPGLINDIMSSGKRMTYEELCNAVLPHWHNLRKHNGERYAY 1033
            PRNISDDDTATAGRPVHHTLPGLIN+IMS G+RMTYEELC+AVLPHW NLRKHNGERYAY
Sbjct: 977  PRNISDDDTATAGRPVHHTLPGLINEIMSKGRRMTYEELCSAVLPHWPNLRKHNGERYAY 1036

Query: 1034 SSHSQAVLDCLRNRHEWARLVDRGPKTNTNRKRRKLDAEESDDSGYGKGRTAKEVEGKNF 1093
            +S SQAVLDCLRNRHEWARLVDRGPKTNT ++R KLDAEES+D+GY KG+TAKE +GKNF
Sbjct: 1037 ASPSQAVLDCLRNRHEWARLVDRGPKTNTRKRRSKLDAEESEDNGYDKGKTAKETDGKNF 1096

Query: 1094 ELQKEEFPXXXXXXXXXXXXXXXXXXVNDVRRRQKADSQTDEDVGPXXXXXXXXXXXXXX 1153
            ELQKEEFP                  V DVRRRQK DS T EDVGP              
Sbjct: 1097 ELQKEEFPKGKRKARKRRRLALQGRAVKDVRRRQKGDSLTGEDVGPFSNTSEGSLFSEDE 1156

Query: 1154 XQNGRTGPAGSTS-DEAGSA 1172
             Q  R GPAGSTS DEAGSA
Sbjct: 1157 VQVDRIGPAGSTSDDEAGSA 1176


>Medtr4g035550.1 | PHD finger plant-like protein | HC |
           chr4:12252668-12255959 | 20130731
          Length = 732

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 30/49 (61%), Gaps = 3/49 (6%)

Query: 22  WTVDCVCGVTFDDGEEMVKCDECGVWVHTRCSRYVKGDDT---FSCDKC 67
           W VDC+CG   DDGE M+ CD CGVW+HTRC+     D     F C +C
Sbjct: 617 WKVDCICGTKDDDGERMLACDTCGVWLHTRCAGIDSADGMPSKFICKRC 665


>Medtr1g076990.3 | PHD finger plant-like protein | HC |
           chr1:34353514-34359940 | 20130731
          Length = 537

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 23/31 (74%)

Query: 22  WTVDCVCGVTFDDGEEMVKCDECGVWVHTRC 52
           WTV+C CG   DDGE M+ CD CGVW HTRC
Sbjct: 449 WTVECSCGAKDDDGERMMACDMCGVWRHTRC 479


>Medtr1g076990.2 | PHD finger plant-like protein | HC |
           chr1:34354596-34359940 | 20130731
          Length = 565

 Score = 55.5 bits (132), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 23/31 (74%)

Query: 22  WTVDCVCGVTFDDGEEMVKCDECGVWVHTRC 52
           WTV+C CG   DDGE M+ CD CGVW HTRC
Sbjct: 477 WTVECSCGAKDDDGERMMACDMCGVWRHTRC 507


>Medtr1g076990.1 | PHD finger plant-like protein | HC |
           chr1:34353455-34359940 | 20130731
          Length = 707

 Score = 55.5 bits (132), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 23/31 (74%)

Query: 22  WTVDCVCGVTFDDGEEMVKCDECGVWVHTRC 52
           WTV+C CG   DDGE M+ CD CGVW HTRC
Sbjct: 619 WTVECSCGAKDDDGERMMACDMCGVWRHTRC 649


>Medtr5g040700.1 | PHD finger protein MALE sterility-like protein |
           HC | chr5:17892813-17888688 | 20130731
          Length = 666

 Score = 52.0 bits (123), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 23  TVDCVCGVTFDDGEEMVKCDECGVWVHTRCSRYVKGDDT---FSCDKC 67
            V+C+CG   +DGE MV CD C +W HTRC R    ++    F C +C
Sbjct: 608 IVECICGTKENDGERMVSCDICEIWQHTRCVRIPNDEEVPHIFLCKRC 655