Miyakogusa Predicted Gene

Lj5g3v1236750.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1236750.1 Non Characterized Hit- tr|I0YWS9|I0YWS9_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,40.14,7e-18,coiled-coil,NULL; seg,NULL; cwf18,mRNA splicing factor,
Cwf18; SUBFAMILY NOT NAMED,NULL; FAMILY NOT ,CUFF.55079.1
         (160 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g077570.1 | cwf18 pre-mRNA splicing factor | HC | chr1:346...   192   1e-49

>Medtr1g077570.1 | cwf18 pre-mRNA splicing factor | HC |
           chr1:34618361-34621579 | 20130731
          Length = 169

 Score =  192 bits (488), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 106/169 (62%), Positives = 123/169 (72%), Gaps = 9/169 (5%)

Query: 1   MGSEEESIEQTVXXXXXXXXXXXXXXXXXNA--PEAGTE-------PESAAANGNDDRDE 51
           MG+E+ESIEQ V                 N+  PE   +       P +++ + ++ ++E
Sbjct: 1   MGTEDESIEQAVASRRERLLALRAAQQLSNSSEPEPNNQDEEQPQPPPTSSEDDDEQQEE 60

Query: 52  SPQEEQENLSMKFRNYVPHDKHLQEGKLAPAVLPKFEDPVAASAPEPHPQEDPFLNIAPK 111
              E +E LSMKFRNYVPHDK+LQEGKLAPAVLPKFEDPV+   PE  P+EDPFLNIAPK
Sbjct: 61  KDGEGEEKLSMKFRNYVPHDKNLQEGKLAPAVLPKFEDPVSVPEPEEKPKEDPFLNIAPK 120

Query: 112 KPNWDLRRDVQKKLDKLEKRTQKALYQLMVEQEKQKELAEGDDTNGTLD 160
           KPNWDLRRDVQKKLDKLEKRTQKALYQLMVEQEKQ +LAEGDDTNGT D
Sbjct: 121 KPNWDLRRDVQKKLDKLEKRTQKALYQLMVEQEKQNQLAEGDDTNGTKD 169