Miyakogusa Predicted Gene

Lj5g3v1211580.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1211580.1 Non Characterized Hit- tr|K4C772|K4C772_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,73.01,0,ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX,Clp
protease, ATP-binding subunit ClpX; HSL AND ,CUFF.55059.1
         (278 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g059910.1 | ATP-dependent Clp protease regulatory subunit ...   260   9e-70
Medtr3g091550.1 | ATP-dependent Clp protease regulatory subunit ...   222   3e-58
Medtr4g134610.1 | AAA domain, Cdc48 subfamily protein | HC | chr...   125   4e-29

>Medtr6g059910.1 | ATP-dependent Clp protease regulatory subunit
           ClpX | HC | chr6:20566263-20573202 | 20130731
          Length = 662

 Score =  260 bits (665), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 143/198 (72%), Positives = 155/198 (78%), Gaps = 8/198 (4%)

Query: 89  AVHTXXXXXXXXXLNLVRAEKTAXXX--------XXXXXXXXLGRDLPTPKEICKGLDKF 140
           AVHT         LN++RA                       LG+DLP+PKEICKGLDKF
Sbjct: 200 AVHTPPGPPFAPGLNVIRARGPQEGGPGGGGNGEKNTWGGSNLGKDLPSPKEICKGLDKF 259

Query: 141 VIGQNSAKKVLSVAVYNHYKRIYYASSQEGSGEDSKISEGKDDDDHVELEKSNVLLMGPT 200
           VIGQ  AKKVLSVAVYNHYKRIY+A+  +GSG DS IS   DDD++VELEKSNVLLMGPT
Sbjct: 260 VIGQGRAKKVLSVAVYNHYKRIYHATLPKGSGADSGISGILDDDENVELEKSNVLLMGPT 319

Query: 201 GSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLVAAEFNVQAAQQGIV 260
           GSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLL AA++NV AAQQGI+
Sbjct: 320 GSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAAADYNVAAAQQGII 379

Query: 261 YIDEVDKITKKAESLNIS 278
           YIDEVDKITKKAESLNIS
Sbjct: 380 YIDEVDKITKKAESLNIS 397


>Medtr3g091550.1 | ATP-dependent Clp protease regulatory subunit
           ClpX | HC | chr3:41648807-41642783 | 20130731
          Length = 581

 Score =  222 bits (566), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 128/158 (81%), Positives = 133/158 (84%), Gaps = 2/158 (1%)

Query: 123 LGRDLPTPKEICKGLDKFVIGQNSAKKVLSVAVYNHYKRIYYASSQEG--SGEDSKISEG 180
           +G   PTPKEICKGLDK VIGQ  AKKVLSVAVYNHYKRIY+        S  D K    
Sbjct: 159 MGGTFPTPKEICKGLDKHVIGQERAKKVLSVAVYNHYKRIYHEKLWHAGDSNIDGKADVV 218

Query: 181 KDDDDHVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESI 240
            DDDD VELEKSN+LLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESI
Sbjct: 219 VDDDDDVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESI 278

Query: 241 LYKLLVAAEFNVQAAQQGIVYIDEVDKITKKAESLNIS 278
           LYKLL AA++NV AAQQGIVYIDEVDKITKKAESLNIS
Sbjct: 279 LYKLLAAADYNVAAAQQGIVYIDEVDKITKKAESLNIS 316


>Medtr4g134610.1 | AAA domain, Cdc48 subfamily protein | HC |
           chr4:56399353-56401236 | 20130731
          Length = 225

 Score =  125 bits (314), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 59/82 (71%), Positives = 70/82 (85%)

Query: 195 LLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLVAAEFNVQA 254
           LL+GPT SGKTLL KTLAR VNVPF +AD+TT TQAGYVG+DV SILY LL  A+F+V+ 
Sbjct: 74  LLIGPTDSGKTLLPKTLARIVNVPFTMADSTTFTQAGYVGQDVHSILYNLLQEADFDVEL 133

Query: 255 AQQGIVYIDEVDKITKKAESLN 276
           AQ GIVYIDE+DKIT K+ES++
Sbjct: 134 AQPGIVYIDEIDKITNKSESIS 155