Miyakogusa Predicted Gene
- Lj5g3v1211580.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1211580.1 Non Characterized Hit- tr|K4C772|K4C772_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,73.01,0,ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX,Clp
protease, ATP-binding subunit ClpX; HSL AND ,CUFF.55059.1
(278 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr6g059910.1 | ATP-dependent Clp protease regulatory subunit ... 260 9e-70
Medtr3g091550.1 | ATP-dependent Clp protease regulatory subunit ... 222 3e-58
Medtr4g134610.1 | AAA domain, Cdc48 subfamily protein | HC | chr... 125 4e-29
>Medtr6g059910.1 | ATP-dependent Clp protease regulatory subunit
ClpX | HC | chr6:20566263-20573202 | 20130731
Length = 662
Score = 260 bits (665), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 143/198 (72%), Positives = 155/198 (78%), Gaps = 8/198 (4%)
Query: 89 AVHTXXXXXXXXXLNLVRAEKTAXXX--------XXXXXXXXLGRDLPTPKEICKGLDKF 140
AVHT LN++RA LG+DLP+PKEICKGLDKF
Sbjct: 200 AVHTPPGPPFAPGLNVIRARGPQEGGPGGGGNGEKNTWGGSNLGKDLPSPKEICKGLDKF 259
Query: 141 VIGQNSAKKVLSVAVYNHYKRIYYASSQEGSGEDSKISEGKDDDDHVELEKSNVLLMGPT 200
VIGQ AKKVLSVAVYNHYKRIY+A+ +GSG DS IS DDD++VELEKSNVLLMGPT
Sbjct: 260 VIGQGRAKKVLSVAVYNHYKRIYHATLPKGSGADSGISGILDDDENVELEKSNVLLMGPT 319
Query: 201 GSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLVAAEFNVQAAQQGIV 260
GSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLL AA++NV AAQQGI+
Sbjct: 320 GSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAAADYNVAAAQQGII 379
Query: 261 YIDEVDKITKKAESLNIS 278
YIDEVDKITKKAESLNIS
Sbjct: 380 YIDEVDKITKKAESLNIS 397
>Medtr3g091550.1 | ATP-dependent Clp protease regulatory subunit
ClpX | HC | chr3:41648807-41642783 | 20130731
Length = 581
Score = 222 bits (566), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 128/158 (81%), Positives = 133/158 (84%), Gaps = 2/158 (1%)
Query: 123 LGRDLPTPKEICKGLDKFVIGQNSAKKVLSVAVYNHYKRIYYASSQEG--SGEDSKISEG 180
+G PTPKEICKGLDK VIGQ AKKVLSVAVYNHYKRIY+ S D K
Sbjct: 159 MGGTFPTPKEICKGLDKHVIGQERAKKVLSVAVYNHYKRIYHEKLWHAGDSNIDGKADVV 218
Query: 181 KDDDDHVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESI 240
DDDD VELEKSN+LLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESI
Sbjct: 219 VDDDDDVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESI 278
Query: 241 LYKLLVAAEFNVQAAQQGIVYIDEVDKITKKAESLNIS 278
LYKLL AA++NV AAQQGIVYIDEVDKITKKAESLNIS
Sbjct: 279 LYKLLAAADYNVAAAQQGIVYIDEVDKITKKAESLNIS 316
>Medtr4g134610.1 | AAA domain, Cdc48 subfamily protein | HC |
chr4:56399353-56401236 | 20130731
Length = 225
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 59/82 (71%), Positives = 70/82 (85%)
Query: 195 LLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLVAAEFNVQA 254
LL+GPT SGKTLL KTLAR VNVPF +AD+TT TQAGYVG+DV SILY LL A+F+V+
Sbjct: 74 LLIGPTDSGKTLLPKTLARIVNVPFTMADSTTFTQAGYVGQDVHSILYNLLQEADFDVEL 133
Query: 255 AQQGIVYIDEVDKITKKAESLN 276
AQ GIVYIDE+DKIT K+ES++
Sbjct: 134 AQPGIVYIDEIDKITNKSESIS 155