Miyakogusa Predicted Gene
- Lj5g3v1201250.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1201250.1 Non Characterized Hit- tr|I1KK11|I1KK11_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,85.24,0,coiled-coil,NULL; seg,NULL; Slu7,Pre-mRNA splicing
Prp18-interacting factor; STEP II SPLICING FACTOR,CUFF.54963.1
(540 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g096940.1 | Pre-mRNA-splicing factor SLU7-like protein | H... 777 0.0
Medtr1g085510.1 | Pre-mRNA-splicing factor SLU7-like protein | H... 408 e-114
Medtr1g076120.1 | Pre-mRNA-splicing factor SLU7-like protein | L... 153 5e-37
>Medtr7g096940.1 | Pre-mRNA-splicing factor SLU7-like protein | HC |
chr7:38920000-38925767 | 20130731
Length = 533
Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/538 (70%), Positives = 416/538 (77%), Gaps = 6/538 (1%)
Query: 1 MATASATFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAEKP 60
MATAS FKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAE+P
Sbjct: 1 MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERP 60
Query: 61 SLKHQRKWKSDPNYTKSWYDRGAKTFQADNYRKGACENCGAMTHNTKSCVERPRKLGAKW 120
SLKHQRKWKSDPNYT SWYDRGAKTFQA YRKGACENCGAMTHN K+C+ERPRK+GAK
Sbjct: 61 SLKHQRKWKSDPNYTTSWYDRGAKTFQAQKYRKGACENCGAMTHNAKACMERPRKVGAKH 120
Query: 121 TNMHIAPDEKIETFELDYDGKRDRWNGYDPATXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
T+ HIA DEK+ETFELDYDGKRDRWNGYD +T
Sbjct: 121 TDKHIAADEKVETFELDYDGKRDRWNGYDASTYARVIERYEARDDARKKFLKEQQLKRLE 180
Query: 181 XXXXXXXXXXXXXXXXXXXXXXAHALKVDEAKVDESKQADFAKVEKRVRXXXXXXXXXVR 240
L+VDEAKVDESKQ DFAKVEKRVR VR
Sbjct: 181 KGDQNDEGAAIDEAEDEDD------LRVDEAKVDESKQMDFAKVEKRVRTTGGGSTGTVR 234
Query: 241 NLRIREDTAKYLLNLDVNSPYYDPKTHSMREDPLPDADPNEKFYGGDNQYRMSGQALEFK 300
NLRIREDTAKYLLNLDVNS +YDPKT SMREDPLP+ADPNEKFY GDNQYR SGQALEFK
Sbjct: 235 NLRIREDTAKYLLNLDVNSAHYDPKTRSMREDPLPEADPNEKFYLGDNQYRSSGQALEFK 294
Query: 301 QLNIHAWEAFEKGQDVHIQAAPSQAELLYKNFKIMKEKLKSQTKDAIIQKYGNAAAQEEL 360
LNIHAWEAF+KGQDVH+QAAPSQAELLYKNFK+MKEKLKSQTKD II+KYGNAA +++L
Sbjct: 295 DLNIHAWEAFDKGQDVHMQAAPSQAELLYKNFKVMKEKLKSQTKDTIIEKYGNAADEDKL 354
Query: 361 PKELLLGQTERQVEYDRAGRIIKGLEASLPKSKYEEDVYINNHTSIWGSWWNDHQWGYKC 420
P+ELLLGQ+ERQVEYDRAGRI+KG E ++P+SKYEEDVYINNHT++WGSWW DHQWG+KC
Sbjct: 355 PRELLLGQSERQVEYDRAGRIVKGQEVAIPRSKYEEDVYINNHTTVWGSWWKDHQWGFKC 414
Query: 421 CKQTIRNSYCTXXXXXXXXXXXXDLMKANIDRKVASEDTPAPAEEKRLATWGTDVPDDLV 480
CKQTIRNSYCT DLM+ANI RK ++ + P P EEKR ATWGTDVPDD+V
Sbjct: 415 CKQTIRNSYCTGAAGIEAAEAAGDLMRANIARKESAAEDPKPIEEKRPATWGTDVPDDVV 474
Query: 481 LDQKKLDEALXXXXXXXXXXXXXXXXXYNVRWNDEVTPEEMEAYRVKKIHHDDPMKDF 538
LD+K L +AL YNVRWND+VT E+MEAYR+KK+HHDDPMK+F
Sbjct: 475 LDEKLLADALKKEDQRKREEKDERKRKYNVRWNDQVTQEDMEAYRMKKVHHDDPMKNF 532
>Medtr1g085510.1 | Pre-mRNA-splicing factor SLU7-like protein | HC |
chr1:38191492-38187117 | 20130731
Length = 387
Score = 408 bits (1049), Expect = e-114, Method: Compositional matrix adjust.
Identities = 227/396 (57%), Positives = 257/396 (64%), Gaps = 24/396 (6%)
Query: 6 ATFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAEKPSLKHQ 65
ATF+SREDH+KQI+LEEA K+GLAPAE DEDGKEINPHIP+++SS P LKHQ
Sbjct: 13 ATFRSREDHQKQIQLEEACKSGLAPAEFDEDGKEINPHIPRFISSPPC--------LKHQ 64
Query: 66 RKWKSDPNYTKSWYDRGAKTFQADNYRKGACENCGAMTHNTKSCVERPRKLGAKWTNMHI 125
RK S PN T S R KTFQA YRKGACENCGAMTH K C+ER RK+ + I
Sbjct: 65 RKRISHPNNTSSRSSRVTKTFQASKYRKGACENCGAMTHVAKECMERARKV-----DKSI 119
Query: 126 APDEKIETFEL---DYDGKRDRWNGYDPATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 182
A DEK ETFE DY+ KRDRW G+D +T
Sbjct: 120 AADEKKETFETAERDYERKRDRWEGFDVSTYARVVKVYEARDHARMKYLKEQKLKKLEKG 179
Query: 183 XXXXXXXXXXXXXXXXXXXXAHALKVDEAKVDESKQADFAKVEKRVRXXXXXXXXXVRNL 242
A KVDE KQ DFAKVEKRVR VRNL
Sbjct: 180 DQNDEGAAIDESEDDLRLDEA---KVDEM-----KQMDFAKVEKRVRTTGGGSRGTVRNL 231
Query: 243 RIREDTAKYLLNLDVNSPYYDPKTHSMREDPLPDADPNEKFYGGDNQYRMSGQALEFKQL 302
RIREDTAKYLLNLDVNS +YDPKT SMREDPLP++DPNEKFY GDN YR SGQALE K+L
Sbjct: 232 RIREDTAKYLLNLDVNSAHYDPKTRSMREDPLPESDPNEKFYLGDNHYRNSGQALEVKEL 291
Query: 303 NIHAWEAFEKGQDVHIQAAPSQAELLYKNFKIMKEKLKSQTKDAIIQKYGNAAAQEELPK 362
N +A EAF+KGQDVH+ A PSQ ELL+KNFK+MKEK SQ K II+KY A ++ LP+
Sbjct: 292 NNNAREAFDKGQDVHMLAGPSQVELLHKNFKVMKEKSMSQWKKTIIEKYNYVALKDPLPR 351
Query: 363 ELLLGQTERQVEYDRAGRIIKGLEASLPKSKYEEDV 398
ELLLGQ+ERQ+ YDRAGRIIKG EA P+SK EED+
Sbjct: 352 ELLLGQSERQILYDRAGRIIKGEEALFPRSKDEEDI 387
>Medtr1g076120.1 | Pre-mRNA-splicing factor SLU7-like protein | LC |
chr1:33719947-33716705 | 20130731
Length = 188
Score = 153 bits (386), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 80/94 (85%)
Query: 59 KPSLKHQRKWKSDPNYTKSWYDRGAKTFQADNYRKGACENCGAMTHNTKSCVERPRKLGA 118
K SLKHQRKWK D +YTKSW+ +GAK FQAD YRKGA E CGA+THN KSC+ERP+++GA
Sbjct: 9 KESLKHQRKWKLDQSYTKSWHHKGAKVFQADKYRKGAYEKCGALTHNAKSCMERPQRIGA 68
Query: 119 KWTNMHIAPDEKIETFELDYDGKRDRWNGYDPAT 152
+WT+ H+APDEKIETFELDYDG DR NGY+ AT
Sbjct: 69 RWTSKHVAPDEKIETFELDYDGNLDRSNGYNTAT 102
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 50/96 (52%), Gaps = 28/96 (29%)
Query: 445 LMKANIDRKVASEDTPAPAEEKRLATWGTDVPDDLVLDQKKLDEALXXXXXXXXXXXXXX 504
L + + + V +TP P EEK+ ATWGTDV LDQKKL EAL
Sbjct: 121 LKEQQLKKLVEKNNTPTPLEEKKFATWGTDV-----LDQKKLVEALK------------- 162
Query: 505 XXXYNVRWNDEVTPEEMEAYRVKKIHHDDPMKDFLH 540
+V+PEEM A R+K IH DDP+K FLH
Sbjct: 163 ----------KVSPEEMVACRMKMIHRDDPVKAFLH 188