Miyakogusa Predicted Gene

Lj5g3v1190150.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1190150.1 Non Characterized Hit- tr|E1ZJK0|E1ZJK0_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,30.09,0.000000000000009,Golgin_A5,Golgin subfamily A member
5; coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL; GOLGIN-84,NULL;
s,CUFF.54960.1
         (230 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g088595.1 | coiled-coil vesicle tethering protein, putativ...   328   2e-90

>Medtr6g088595.1 | coiled-coil vesicle tethering protein, putative |
           HC | chr6:33723205-33733399 | 20130731
          Length = 711

 Score =  328 bits (842), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 171/234 (73%), Positives = 181/234 (77%), Gaps = 4/234 (1%)

Query: 1   MEARLRREQKKSPEEANQVIQMQAWQEEVERARQGQRXXXXXXXXXXXXXQKMRVEMAAM 60
           MEARLRREQKKSPEEANQVIQ+QAWQEEVERARQGQR             QK+RVEMAAM
Sbjct: 478 MEARLRREQKKSPEEANQVIQIQAWQEEVERARQGQREAENKLSSLEAELQKLRVEMAAM 537

Query: 61  KRDAEHYSRQEHMELEKRYRELTDLLYYKQTQLETMVSEKAATEFQLEKEIKRLQEAQAD 120
           KRDAEHYSRQEH ELEKRYRELTDLLYYKQTQLETMVSEKAATEFQLEKEIKRL+EAQA+
Sbjct: 538 KRDAEHYSRQEHTELEKRYRELTDLLYYKQTQLETMVSEKAATEFQLEKEIKRLKEAQAE 597

Query: 121 VEXXXXXXXXXXXWEDETEIKSLEPLPLHHRHLAGASIQLQKAVKLLDSGAVRATRFLWR 180
            E           WEDET+IK+LEPLPLHHRHLAGASIQLQKAVKLLDSGAVRATRFLWR
Sbjct: 598 TERSRVSRRASSSWEDETDIKALEPLPLHHRHLAGASIQLQKAVKLLDSGAVRATRFLWR 657

Query: 181 YPTARVGXXXXXXXXXXXXXXXXXRLQEQADIISTREVAE----AMGLSNQNLP 230
           YPTARV                   LQ QAD ++ REVAE    +MGLSN +LP
Sbjct: 658 YPTARVFLFFYLVFVHLFLMYLLHCLQVQADSMADREVAESMGLSMGLSNHSLP 711