Miyakogusa Predicted Gene

Lj5g3v1176940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1176940.1 Non Characterized Hit- tr|I3S398|I3S398_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.19,0,Ribosomal_L14e,Ribosomal protein L14; SUBFAMILY NOT
NAMED,NULL; 60S RIBOSOMAL PROTEIN L14,NULL; no
d,NODE_22634_length_378_cov_1010.415344.path2.1
         (125 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g120770.1 | 60S ribosomal L14-like protein | HC | chr4:500...   223   3e-59
Medtr1g075720.1 | 60S ribosomal L14-like protein | HC | chr1:335...   222   6e-59

>Medtr4g120770.1 | 60S ribosomal L14-like protein | HC |
           chr4:50003492-50006693 | 20130731
          Length = 133

 Score =  223 bits (568), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 109/125 (87%), Positives = 118/125 (94%)

Query: 1   MPFKRFVEVGRVALVNYGKDYGRLVVIVDIIDQNRALIDAPDMERSQMNLKRLSLTDIKI 60
           MPFKRFVE+GRVAL+NYG +YGR+VVIVD+IDQ RAL+DAPDMERS +N KRLSLTDIKI
Sbjct: 1   MPFKRFVEIGRVALINYGPEYGRIVVIVDVIDQTRALVDAPDMERSPINFKRLSLTDIKI 60

Query: 61  DIKRVPKKKDLIAAMEAADVKNKWEKSSWGRKLIVRKRRASLNDFDRFKIMLAKIKRAGA 120
           DIKRVPKKKDLI AMEAADVKNKWEKSSWGRKLIV+KRRA+LNDFDRFKIMLAKIKRAG 
Sbjct: 61  DIKRVPKKKDLIKAMEAADVKNKWEKSSWGRKLIVKKRRAALNDFDRFKIMLAKIKRAGV 120

Query: 121 VRTEL 125
           VR EL
Sbjct: 121 VRQEL 125


>Medtr1g075720.1 | 60S ribosomal L14-like protein | HC |
           chr1:33547954-33549648 | 20130731
          Length = 133

 Score =  222 bits (566), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 109/125 (87%), Positives = 117/125 (93%)

Query: 1   MPFKRFVEVGRVALVNYGKDYGRLVVIVDIIDQNRALIDAPDMERSQMNLKRLSLTDIKI 60
           MPFKRFVE+GRVALVNYG DYG+LVVIVD+IDQ RAL+DAPDMER  +N KRLSLTDIKI
Sbjct: 1   MPFKRFVEIGRVALVNYGPDYGKLVVIVDVIDQTRALVDAPDMERVPINFKRLSLTDIKI 60

Query: 61  DIKRVPKKKDLIAAMEAADVKNKWEKSSWGRKLIVRKRRASLNDFDRFKIMLAKIKRAGA 120
           DIKRVPKKKDL+ AMEAADVKNKWEKSSWGRKLIV+KRRA+LNDFDRFKIMLAKIKRAG 
Sbjct: 61  DIKRVPKKKDLVKAMEAADVKNKWEKSSWGRKLIVKKRRAALNDFDRFKIMLAKIKRAGV 120

Query: 121 VRTEL 125
           VR EL
Sbjct: 121 VRQEL 125