Miyakogusa Predicted Gene

Lj5g3v1176860.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1176860.1 Non Characterized Hit- tr|I1PTI1|I1PTI1_ORYGL
Uncharacterized protein (Fragment) OS=Oryza
glaberrima,81.13,7e-19,PAP_fibrillin,Plastid lipid-associated
protein/fibrillin conserved domain; coiled-coil,NULL;
seg,NUL,CUFF.54938.1
         (287 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g075660.1 | plastid fibrillin | HC | chr1:33526397-3352887...   343   1e-94
Medtr2g007640.1 | plastid lipid-associated protein | HC | chr2:1...    55   8e-08

>Medtr1g075660.1 | plastid fibrillin | HC | chr1:33526397-33528879 |
           20130731
          Length = 276

 Score =  343 bits (880), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 191/287 (66%), Positives = 214/287 (74%), Gaps = 13/287 (4%)

Query: 3   MASLNFXXXXXXXXXXXXXXXCSIPKGFVPCYN-IHALKLKG-HLQTSQSRRSLLVVKSA 60
           MASLN                 S    F P  N I+ L  KG H++ S      L+VK+A
Sbjct: 1   MASLNLLLHPSTSLSHPLLPFSSSCSCFFPRTNSINVLTPKGKHIKPSS-----LIVKAA 55

Query: 61  VGEGREASVVDPPPSTPDFPWDAPSKSTLKFNLLSAVSGLNRGLAANEDDLQKXXXXXXX 120
                  S   P PS P   +D  S S LKFNLLSAVSGLNRGLAA+E+DLQK       
Sbjct: 56  AEADISISGSIPIPSNP---FD--STSPLKFNLLSAVSGLNRGLAASEEDLQKADAAAKE 110

Query: 121 XXXXGGVVDLSVENIDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRID 180
               GG+VDL+ +N+D+LQGRWKLIYSSAFSSRTLGGSRPGPP GRLLPITLGQVFQRID
Sbjct: 111 LEDAGGLVDLT-DNLDRLQGRWKLIYSSAFSSRTLGGSRPGPPIGRLLPITLGQVFQRID 169

Query: 181 VLSKDFDNIVELQLGAPWPLPPLEATATLAHKFELIGSSKIKIKFEKTTVKTLGNFSQLP 240
           +LSKDFDNIV+LQLGAPWPLPPLE TATLAHKFEL+GSSKIKI FEKTTVKT G FSQLP
Sbjct: 170 ILSKDFDNIVDLQLGAPWPLPPLEVTATLAHKFELVGSSKIKIIFEKTTVKTTGTFSQLP 229

Query: 241 PLELPRIPDALRPSSNRGSGEFEVTFLDSDTRITRGDKGELRVFVIA 287
           PL+LP+IPDALRP SNRGSG+FEVT+LD+DTR+TRGD+GELRVFVIA
Sbjct: 230 PLDLPQIPDALRPQSNRGSGDFEVTYLDADTRVTRGDRGELRVFVIA 276


>Medtr2g007640.1 | plastid lipid-associated protein | HC |
           chr2:1048874-1052079 | 20130731
          Length = 248

 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 85/197 (43%), Gaps = 37/197 (18%)

Query: 88  TLKFNLLSAVSGLNRGLAANEDDLQKXXXXXXXXXXXGGVVDLSVENIDKLQGRWKLIYS 147
           +LK  L   +  L RG  A  +D Q+             V +    N D L G+W+L+Y+
Sbjct: 78  SLKVELYETIEPLERGAEATPEDQQRVDKIARKLEAMNSVKE--PLNSDLLNGKWELLYT 135

Query: 148 SAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDVLSKDFDNIVELQLGAPWPLPPLEATA 207
           +  S   L   RP      L P   G+++Q I+  +    NI        WP    +ATA
Sbjct: 136 T--SQSILQTQRPK----FLRPN--GKIYQAINTDTLRAQNI------ETWPFYN-QATA 180

Query: 208 TLAHKFELIGSSKIKIKFEKTTVKTLGNFSQLPPLELPRIPDALRPSSNRGSGEFEVTFL 267
            L      + S ++ +KF+   + +L             IP     SS  G G+ E+T+L
Sbjct: 181 NLVP----LNSRRVAVKFDFFKIASL-------------IPIK---SSGSGRGQLEITYL 220

Query: 268 DSDTRITRGDKGELRVF 284
           D D RI+RG++G L + 
Sbjct: 221 DEDLRISRGNRGNLFIL 237