Miyakogusa Predicted Gene

Lj5g3v1176670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1176670.1 Non Characterized Hit- tr|C6T5N3|C6T5N3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.9678 PE=,72.31,2e-19,no
description,Nucleic acid-binding,
OB-fold,gene.Ljchr5_pseudomol_20120830.path1.gene3871.1
         (65 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g475140.1 | DNA-directed RNA polymerase II subunit Rpb7-li...    86   9e-18
Medtr1g069100.1 | DNA-directed RNA polymerase II subunit Rpb7-li...    65   1e-11

>Medtr1g475140.1 | DNA-directed RNA polymerase II subunit Rpb7-like
           protein | HC | chr1:33201883-33201326 | 20130731
          Length = 185

 Score = 85.5 bits (210), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 41/65 (63%), Positives = 48/65 (73%), Gaps = 2/65 (3%)

Query: 1   MADYRYFPGENAYFMNEKSSKIANDVTVRFLVIGTRWMETKRGFELHALVSLEGNYLGPI 60
           M  Y Y  GEN YFMN+K  KIA DV VR +VIGT+WME +R  E  ALV LEG+YLGPI
Sbjct: 123 MPGYVYVLGENPYFMNQKMPKIAKDVKVRVVVIGTKWMEAER--EFQALVGLEGDYLGPI 180

Query: 61  ASPDI 65
           +SPD+
Sbjct: 181 SSPDM 185


>Medtr1g069100.1 | DNA-directed RNA polymerase II subunit Rpb7-like
           protein | HC | chr1:29662562-29663122 | 20130731
          Length = 186

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 41/65 (63%), Gaps = 5/65 (7%)

Query: 1   MADYRYFPGENAYFMNEKSSKIANDVTVRFLVIGTRWMETKRGFELHALVSLEGNYLGPI 60
           M  Y Y  GEN   MN+K  +IA DV VR +VIG +WM+ +R F       LEG+YLG I
Sbjct: 127 MLGYMYILGENQISMNQKMPEIAKDVKVRVVVIGMKWMQAEREFH-----GLEGDYLGSI 181

Query: 61  ASPDI 65
           +SPD+
Sbjct: 182 SSPDM 186