Miyakogusa Predicted Gene

Lj5g3v1174300.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1174300.1 tr|A9RXM1|A9RXM1_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_71882
,27.27,0.00000000000004,no description,DNA double-strand break repair
and VJ recombination XRCC4, N-terminal; no description,CUFF.54888.1
         (260 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g075330.1 | DNA-repair protein XRCC4, putative | HC | chr1...   357   5e-99

>Medtr1g075330.1 | DNA-repair protein XRCC4, putative | HC |
           chr1:33351200-33355764 | 20130731
          Length = 256

 Score =  357 bits (917), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 174/217 (80%), Positives = 191/217 (88%), Gaps = 2/217 (0%)

Query: 1   MEETKRHTCLKLQIPNANETIFVKGTWFDTHFDLAITDGVAAWHCHASEDEVKQRAAQWD 60
           MEE KRHTCLKLQ+    E+IFVKGTWF+THF+L+ITDG  +WHC+ASEDEVKQRAAQWD
Sbjct: 1   MEEKKRHTCLKLQL-TEEESIFVKGTWFNTHFNLSITDGSTSWHCNASEDEVKQRAAQWD 59

Query: 61  QPVSEYVEMSERYLGFQQPGSVYAFADPGDGHKRLSWTFEKEGMTLQWRWKCLQSSDCKK 120
           QPV EYVE+SERYLGFQQP SVYAFAD GD HKRLSWTFEK GMTL WRWKC++S DCKK
Sbjct: 60  QPVEEYVELSERYLGFQQPESVYAFADAGDAHKRLSWTFEKGGMTLHWRWKCMKSPDCKK 119

Query: 121 TTAEILDFLMDANITLSEEVVRKNELFEKMKEESEKCLAQSEKIAKEKVEFESEIYVKFL 180
           TTAEILDFLMDANI LSEEVV K ELFEK K E+EKCLAQSE+IA E+VEFES+IY KFL
Sbjct: 120 TTAEILDFLMDANIRLSEEVVIKTELFEKTKVEAEKCLAQSERIANERVEFESQIYTKFL 179

Query: 181 GVLNSKKSKLRELRDQLSKQDKAEKSPPQEEEDTDKT 217
           GVLNSKK+KLRELRDQLSKQ   +KS PQEEED +KT
Sbjct: 180 GVLNSKKAKLRELRDQLSKQGNGDKS-PQEEEDPEKT 215