Miyakogusa Predicted Gene

Lj5g3v1135090.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1135090.1 Non Characterized Hit- tr|I1NI18|I1NI18_SOYBN
Uncharacterized protein OS=Glycine max PE=3
SV=1,85.14,0,Actin,Actin-like; no description,NULL; Actin-like ATPase
domain,NULL; seg,NULL; ACTIN-RELATED
PROTEI,NODE_57111_length_2060_cov_38.060196.path1.1
         (592 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g073920.1 | actin-related protein ARP4 | HC | chr1:3285089...  1040   0.0  

>Medtr1g073920.1 | actin-related protein ARP4 | HC |
           chr1:32850898-32838387 | 20130731
          Length = 592

 Score = 1040 bits (2690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/595 (83%), Positives = 544/595 (91%), Gaps = 6/595 (1%)

Query: 1   MDYLKTALPSQVMSERGSNLVVINPGSANIRIGLASQDTPFDIPHCIARHTKQVPKKNVQ 60
           MDYLK+ALPSQ+MS+RGSNLVVINPGSANIRIGLASQDTP++IPHCIA +TKQVPKKNVQ
Sbjct: 1   MDYLKSALPSQIMSDRGSNLVVINPGSANIRIGLASQDTPYNIPHCIAHYTKQVPKKNVQ 60

Query: 61  DQMLNSQVTTALYMEREKAYDSIASLLKIPFLDEETPSSSFPRKLGRVDGHNPHITRKDL 120
           DQMLNSQVTTA +MEREKAYD IASLLKIPFLDEE  S+SFPRK+GRVDGH PH  RKD 
Sbjct: 61  DQMLNSQVTTAQHMEREKAYDVIASLLKIPFLDEEPSSNSFPRKMGRVDGHMPH--RKDS 118

Query: 121 PFTWTNVYXXXXXXXXXXX--XXNKDETGESLDPKE-GTDSKEIGINEQKFREFICGEEA 177
           PFTWTNVY               +K ET ESL+PKE GTD KEIG + QKFR+FICGEEA
Sbjct: 119 PFTWTNVYEEVTSSSSVSALDTASKAETSESLNPKEEGTDLKEIGASNQKFRKFICGEEA 178

Query: 178 LRISPADPYCLCRPIRRGHLNISLYYPMQQVLEDLHAIWDWILIEKLHIPRNERNMYSAI 237
           LRISP +PYCLCRPIRRGHLNIS +YPMQQV EDL AIWDWILIEKLHIPRNERNMYSAI
Sbjct: 179 LRISPTEPYCLCRPIRRGHLNISQHYPMQQVFEDLRAIWDWILIEKLHIPRNERNMYSAI 238

Query: 238 LVMPETFDNREIKEMLSLVLQELCFGSAVVHQEGLAAVFGNGLSTACVVNIGAQVTSLIC 297
           LV+PETFDNREIKE+LSLVL+ELCFGSAVVHQEGLAAVFGNGLSTACVVNIGAQVTS+IC
Sbjct: 239 LVLPETFDNREIKEILSLVLEELCFGSAVVHQEGLAAVFGNGLSTACVVNIGAQVTSIIC 298

Query: 298 IEDGGALPSTAKTLTFGGEDISRSLLWTQRHHQTWPQIRTDVLTKPIDLLMLNQLKETYC 357
           IE+G  +PSTAKTLTFGGEDISRSLL+TQRHHQTWPQIRTD+LTKPIDLLMLNQLKE+YC
Sbjct: 299 IEEGATMPSTAKTLTFGGEDISRSLLYTQRHHQTWPQIRTDMLTKPIDLLMLNQLKESYC 358

Query: 358 EIKEGELEAVAVVHSYEGNAPAGSHKTRLTALNVPPMGLFYPMLLVPEVYPPPPRTWFHD 417
           EI+EG+L+AVAVVHSYE     GSHKTRLTALNVPPMGLFYPM  VP+VYPPPPRTWF+D
Sbjct: 359 EIREGQLDAVAVVHSYEDKVLPGSHKTRLTALNVPPMGLFYPMFFVPDVYPPPPRTWFND 418

Query: 418 YEDMLEDTFYSNEFSRRSDMSDTFYPNVNGGLPMWESYPFYSTKPKKEEKVGLAEAITHC 477
           +EDMLEDT +  +FSRRSDMSDTFYPNVNGG+PMWESYP +STKPKKEE +GLAEAIT+C
Sbjct: 419 HEDMLEDT-WQIDFSRRSDMSDTFYPNVNGGMPMWESYPPFSTKPKKEENLGLAEAITNC 477

Query: 478 ILSTGRIDIQRKLFCSIQLTGGVALTNGLVPAVEERVLHAIPPNEAIDTVEVLQSRTNPT 537
           ILSTGRID+QRKLFCSIQLTGGVALTNGLVPAVEERVLHAIP NEAIDTVEV+QSR NPT
Sbjct: 478 ILSTGRIDMQRKLFCSIQLTGGVALTNGLVPAVEERVLHAIPSNEAIDTVEVIQSRANPT 537

Query: 538 FVPWKGGAILGVLDLGRDAWISREDWIKNGVHVGSNRKYKDSYFLQAQAMCYMNS 592
           FV WKGGAILGV+D+GRDAWI+REDWI++G+HVGSNRKYKDSY+LQAQAMCYMNS
Sbjct: 538 FVSWKGGAILGVIDVGRDAWINREDWIQSGIHVGSNRKYKDSYYLQAQAMCYMNS 592