Miyakogusa Predicted Gene

Lj5g3v1096020.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1096020.2 tr|C3US34|C3US34_9BRAS At4g21150-like protein
(Fragment) OS=Capsella grandiflora PE=4 SV=1,57.58,0.004,seg,NULL;
Ribophorin_II,Ribophorin II; SUBFAMILY NOT NAMED,NULL; RIBOPHORIN
II,Ribophorin II,CUFF.54770.2
         (199 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g069780.1 | oligosaccharyltransferase subunit ribophorin I...   279   1e-75

>Medtr1g069780.1 | oligosaccharyltransferase subunit ribophorin II |
           HC | chr1:30441015-30449656 | 20130731
          Length = 689

 Score =  279 bits (714), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 137/165 (83%), Positives = 151/165 (91%)

Query: 8   DDGTFYFDEKLISGHEHWGSLSTTASVVRGVTAFAAVTSGKINLSGDKILGLAKFFLGIG 67
           DDG FYFDEK + G EH GSLS T+SVVRGVTAFAAVTSGKIN+  D ILGLAKFFLGIG
Sbjct: 224 DDGAFYFDEKTVRGSEHQGSLSATSSVVRGVTAFAAVTSGKINVPRDTILGLAKFFLGIG 283

Query: 68  IPGDAKDFFNQVESLAFLESNRISIPLILSLPETVYSLTNKGQVKVRVNTVLGSVAPPLT 127
           IPGDAKDFF+QVESL+FLESNRISIPLILSLPETVYSLT KGQ+KV+VNTVLGS APPLT
Sbjct: 284 IPGDAKDFFHQVESLSFLESNRISIPLILSLPETVYSLTKKGQLKVKVNTVLGSAAPPLT 343

Query: 128 VKLVQAFSTGAKDSAIIDNKELQYNKKSGFYFLDALPKNVDVGTY 172
           VKLV+A STGAKDSAII++KELQY++KSGF+FLD+ P NVDVGTY
Sbjct: 344 VKLVRASSTGAKDSAIIESKELQYDQKSGFHFLDSFPNNVDVGTY 388