Miyakogusa Predicted Gene

Lj5g3v1096020.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1096020.1 tr|A8XKX1|A8XKX1_CAEBR Protein CBR-OSTD-1
OS=Caenorhabditis briggsae GN=ostd-1 PE=4 SV=2,39.47,9e-19,seg,NULL;
Ribophorin_II,Ribophorin II; SUBFAMILY NOT NAMED,NULL; RIBOPHORIN
II,Ribophorin II,CUFF.54770.1
         (155 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g069780.1 | oligosaccharyltransferase subunit ribophorin I...   184   2e-47

>Medtr1g069780.1 | oligosaccharyltransferase subunit ribophorin II |
           HC | chr1:30441015-30449656 | 20130731
          Length = 689

 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 97/155 (62%), Positives = 101/155 (65%)

Query: 1   MENSFLRLIGHVELDFPEAPEKAARPPTPPVDPYSRYGPKAEINHIFRVPEKRPAQEXXX 60
           MENSF RL+GHVELD PEAPEKAARPP PPVDPYSRYGPKAEINHIFR PEKRP Q+   
Sbjct: 535 MENSFSRLLGHVELDLPEAPEKAARPPAPPVDPYSRYGPKAEINHIFRAPEKRPPQKLSL 594

Query: 61  XXXXXXXXXXXXXXXXXXRLGVNLKNFPSSTVPATFAILFHGGIAAVXXXXXXXXXXXXX 120
                             RLGVNLKNFP STVPATFA LFH G+AA+             
Sbjct: 595 VFLGLILLPFIGFLVGLLRLGVNLKNFPGSTVPATFATLFHLGLAAILLLYVLFWLKLDL 654

Query: 121 FTTLKXXXXXXXXXXXVGHRILSHLAHTSAKLKSA 155
           FTTLK           VGHRILSHLA TSAKLKSA
Sbjct: 655 FTTLKTLGLLGAFTMIVGHRILSHLASTSAKLKSA 689