Miyakogusa Predicted Gene

Lj5g3v1073870.2
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1073870.2 tr|I1LYK3|I1LYK3_SOYBN Structural maintenance of
chromosomes protein OS=Glycine max PE=3 SV=1,86.53,0,seg,NULL; SMC
proteins Flexible Hinge Domain,SMCs flexible hinge;
SMC_N,RecF/RecN/SMC; SMC_hinge,SMC,CUFF.54763.2
         (594 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g069910.1 | structural maintenance of chromosomes protein ...   855   0.0  
Medtr0003s0460.1 | structural maintenance of chromosomes protein...   672   0.0  
Medtr1g058610.1 | ICE-like protease (caspase) p20 domain protein...   384   e-106
Medtr8g072890.1 | structural maintenance of chromosomes protein ...    96   9e-20
Medtr7g091420.1 | structural maintenance of chromosomes protein ...    92   2e-18
Medtr8g037325.1 | structural maintenance of chromosomes protein ...    89   1e-17
Medtr1g051825.1 | structural maintenance of chromosomes protein ...    50   9e-06

>Medtr1g069910.1 | structural maintenance of chromosomes protein |
           HC | chr1:30581189-30595745 | 20130731
          Length = 1216

 Score =  855 bits (2209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/593 (72%), Positives = 476/593 (80%)

Query: 1   MPSLLSPGKIHRLEMENFKSYKGFQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTG 60
           MPSL SPGKI RLE+ NFKSYKGFQ IGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRT 
Sbjct: 1   MPSLHSPGKILRLELSNFKSYKGFQQIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTN 60

Query: 61  QLRGAQLKDLIYAFDDREKEQRGRRAFVRLVYQLANNSEIQFTRTITSAGASEYRIDGNL 120
           QLRGAQLKDLIY FDDREKE +GRRAFVRLVYQLAN SEI+FTRTITSAGASEYRID ++
Sbjct: 61  QLRGAQLKDLIYTFDDREKEHKGRRAFVRLVYQLANESEIKFTRTITSAGASEYRIDDSV 120

Query: 121 VNWDIYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGSDELKRDYEQF 180
           VNWD+YNA+LKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGSDELKRDYEQF
Sbjct: 121 VNWDVYNARLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGSDELKRDYEQF 180

Query: 181 XXXXXXXXXXSALIYQKKKTVVMXXXXXXXXXXXXXXHLRLQEQLKSVKKEHFLWQLFNI 240
                     SAL+YQKKKT+VM              H+RLQ+QLKS+KKEHFLWQLFNI
Sbjct: 181 EEEKASAEEKSALVYQKKKTMVMERKQKKEQKEEAEKHIRLQDQLKSMKKEHFLWQLFNI 240

Query: 241 ENDIXXXXXXXXXXXXSRLAVIEELGNFXXXXXXXXXXXXXXXXXIALREKKITEKSNKL 300
           END+            SR  VI+EL NF                 + LREKKI EKSN+L
Sbjct: 241 ENDVVKTTEELEADKRSREGVIKELENFEHEAGKKKKEQAKYLKEVMLREKKIAEKSNRL 300

Query: 301 DKSQPELLKLKEEMTRINSXXXXXXXXXXXXXXXXXXHAADIAELQRGIQDLAAKMADLQ 360
           DK+QPELLKLKEEM+RI++                  HA DIA+LQ GI+DL  KM DL 
Sbjct: 301 DKTQPELLKLKEEMSRISTKIKKGKKELGKKREEQKGHAKDIADLQSGIEDLTGKMKDLN 360

Query: 361 EKSRGVGNXXXXXXXXXXXYFRIKEEAGMKTAKLREEKELLDRQQHADSEAQKNSEENLQ 420
           EK R VG+           YFRIKEEAGMKTAKLREEKELLDRQQHADSEAQ N EENLQ
Sbjct: 361 EKGRNVGDQIQLDDNELQEYFRIKEEAGMKTAKLREEKELLDRQQHADSEAQNNLEENLQ 420

Query: 421 QLRNRESELNSQEEQMQARLKKIVDSSAKNKDGLANLKKELRVMQDKHRDSKKKYENLKL 480
           QL+NRE+EL+SQE+QM+ RL+KI+DSSAKNKD + +L ++LR M++ H  SK++Y+NLK+
Sbjct: 421 QLKNREAELDSQEKQMRERLEKILDSSAKNKDVVEDLNRQLRKMKEDHSASKRRYDNLKI 480

Query: 481 KIGELENQLRELKADRHENERDAKLSQAVETLKRLFQGVHGRITELCRPTQKKYNLAVTV 540
           KIGE+EN+LR+LKADR+ENERDAKLSQAV TLKRLFQGVHGR+T+LCRPTQKKYNLAVTV
Sbjct: 481 KIGEIENKLRDLKADRYENERDAKLSQAVATLKRLFQGVHGRMTDLCRPTQKKYNLAVTV 540

Query: 541 AMGKFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSIRVKPIMERLRALG 593
           AMGK MDAVVVEDEKTGKECIKYLK+QRLPPQTFIPLQSIRVK IMERLR+LG
Sbjct: 541 AMGKLMDAVVVEDEKTGKECIKYLKEQRLPPQTFIPLQSIRVKQIMERLRSLG 593


>Medtr0003s0460.1 | structural maintenance of chromosomes protein |
           HC | scaffold0003:229552-233442 | 20130731
          Length = 1208

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/590 (60%), Positives = 418/590 (70%), Gaps = 7/590 (1%)

Query: 5   LSPGKIHRLEMENFKSYKGFQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRG 64
           +S GKIHRLE+ENFKSYKG Q+IGPF  FTAIIGPNGAGKSNLMDAI FVLGVRT  LRG
Sbjct: 1   MSLGKIHRLEIENFKSYKGSQIIGPFAGFTAIIGPNGAGKSNLMDAICFVLGVRTFHLRG 60

Query: 65  AQLKDLIYAFDDREKEQRGRRAFVRLVYQLANNSEIQFTRTITSAGASEYRIDGNLVNWD 124
           +QL DLIY  DD EK++  R A VRL+YQLA+ SEIQF RTIT+ GAS+Y ID N+V WD
Sbjct: 61  SQLTDLIY--DDSEKQKNERSALVRLIYQLADKSEIQFARTITATGASQYFIDDNVVTWD 118

Query: 125 IYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGSDELKRDYEQFXXXX 184
           +YNAKL SL ILVKARNFLVFQG VESIASKNPKELT L EQISGSD+ KR+Y++     
Sbjct: 119 VYNAKLISLDILVKARNFLVFQGYVESIASKNPKELTLLFEQISGSDQFKREYDKLEDEK 178

Query: 185 XXXXXXSALIYQKKKTVVMXXXXXXXXXXXXXXHLRLQEQLKSVKKEHFLWQLFNIENDI 244
                  AL+YQKKKT++M              HLRLQ++LKS K+EHFLW+LFNIEND 
Sbjct: 179 NSAEEKMALVYQKKKTILMEKKKKKEQKKKAEEHLRLQDELKSKKEEHFLWKLFNIENDF 238

Query: 245 XXXXXXXXXXXXSRLAVIEELGNFXXXXXXXXXXXXXXXXXIALREKKITEKSNKLD-KS 303
                       S   V +E+  F                 I L E+KITE SNKLD K+
Sbjct: 239 AKTTEELEVDKTSCEGVGKEVEKFEHEANEKEKELANCVEEIKLLEEKITEISNKLDDKT 298

Query: 304 QPELLKLKEEMTRINSXXXXXXXXXXXXXXXXXXHAADIAELQRGIQDLAAKMADLQEKS 363
           +P+++KLKE+++RIN                   HA DIA L+R I DL AK  DLQEK 
Sbjct: 299 RPDVIKLKEKISRINLKIEKVKKELCKKGEERKRHANDIAMLKRSIWDLEAKKDDLQEKG 358

Query: 364 RGVGNXXXXXXXXXXXYFRIKEEAGMKTAKLREEKELLDRQQHADSEAQKNSEENLQQLR 423
           R VG            Y RIKEE  +KTA LRE+KELLD QQ  DSEAQ N EE LQQL+
Sbjct: 359 RNVGGQIKLDGNDLEEYSRIKEEVRIKTANLREKKELLDGQQRGDSEAQTNLEETLQQLK 418

Query: 424 NRESELNSQEEQMQARLKKIVDSSAKNKDGLANLKKELRVMQDKHRDSKKKYENLKLKIG 483
           NRESEL+S+E+QM+ RL    D+ AKNKD L N K+EL ++Q+K  D K++Y NLK KIG
Sbjct: 419 NRESELDSKEKQMRERL----DNFAKNKDDLENTKRELCLLQEKQSDFKREYHNLKKKIG 474

Query: 484 ELENQLRELKADRHENERDAKLSQAVETLKRLFQGVHGRITELCRPTQKKYNLAVTVAMG 543
           ++ N+L ELK+DR+ENERDAK +  V TLKRLFQGVHGR+T++CRPTQKKYNLAVTVAMG
Sbjct: 475 DVVNELHELKSDRYENERDAKFADTVATLKRLFQGVHGRMTDICRPTQKKYNLAVTVAMG 534

Query: 544 KFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSIRVKPIMERLRALG 593
           K MDA+VVEDE T KECI++LK+ R PPQTFIPLQSIRV  I+ERLR+LG
Sbjct: 535 KLMDAIVVEDENTAKECIRHLKELRFPPQTFIPLQSIRVNLIIERLRSLG 584


>Medtr1g058610.1 | ICE-like protease (caspase) p20 domain protein |
           LC | chr1:25831446-25835509 | 20130731
          Length = 651

 Score =  384 bits (985), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/301 (66%), Positives = 233/301 (77%)

Query: 293 ITEKSNKLDKSQPELLKLKEEMTRINSXXXXXXXXXXXXXXXXXXHAADIAELQRGIQDL 352
           ++  S      QPELLKLKEEM+RI++                  +A DIA+L+ GI+DL
Sbjct: 295 VSTGSKSFGYKQPELLKLKEEMSRISTKIKKGQKELGKKREEQRGNAKDIADLKSGIEDL 354

Query: 353 AAKMADLQEKSRGVGNXXXXXXXXXXXYFRIKEEAGMKTAKLREEKELLDRQQHADSEAQ 412
             KM DL+EK R VGN           YFRI EEAGMK AKLREEKELLDRQQHADSE +
Sbjct: 355 TGKMKDLKEKGRNVGNQIQLDDNDLQEYFRINEEAGMKIAKLREEKELLDRQQHADSEVE 414

Query: 413 KNSEENLQQLRNRESELNSQEEQMQARLKKIVDSSAKNKDGLANLKKELRVMQDKHRDSK 472
            N EENLQQL+N+E+EL+SQE+QM+ RL+KI+DSSAKNKD +  L  EL  M+++   SK
Sbjct: 415 NNLEENLQQLKNQETELDSQEKQMRERLEKILDSSAKNKDYIEKLNTELHNMKEERSASK 474

Query: 473 KKYENLKLKIGELENQLRELKADRHENERDAKLSQAVETLKRLFQGVHGRITELCRPTQK 532
           +KY+NLK+K GE+EN+LRELKADR+ENERDAKLSQAV TLKRLFQGVHGR+T+LC PTQK
Sbjct: 475 RKYDNLKIKNGEIENKLRELKADRYENERDAKLSQAVATLKRLFQGVHGRMTDLCWPTQK 534

Query: 533 KYNLAVTVAMGKFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSIRVKPIMERLRAL 592
           K+NLAVTVAMGK MDAVVVEDEKT KECIKYLK+QRLPPQTFIPLQSI VK  MERLR+L
Sbjct: 535 KFNLAVTVAMGKLMDAVVVEDEKTRKECIKYLKEQRLPPQTFIPLQSICVKQRMERLRSL 594

Query: 593 G 593
           G
Sbjct: 595 G 595


>Medtr8g072890.1 | structural maintenance of chromosomes protein |
           HC | chr8:30809876-30822392 | 20130731
          Length = 1233

 Score = 95.9 bits (237), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 86/158 (54%), Gaps = 9/158 (5%)

Query: 10  IHRLEMENFKSYKGFQVIGPFY-DFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLK 68
           I  + M NFKSY G Q +GPF+  F+A++GPNG+GKSN++DA+ FV G R  Q+R  ++ 
Sbjct: 16  IQEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVS 75

Query: 69  DLIYAFDDREK-EQRGRRA-FVRLV------YQLANNSEIQFTRTITSAGASEYRIDGNL 120
           +LI+   + +  +  G    F  +V      Y+    ++   TR      +S+Y I+   
Sbjct: 76  ELIHNSSNHQNLDSAGVSVHFQEIVDLEDGTYETVPGTDFVITRVAFRDNSSKYYINNRS 135

Query: 121 VNWDIYNAKLKSLGILVKARNFLVFQGDVESIASKNPK 158
            N+     KLK  G+ +    FL+ QG+VE I+   PK
Sbjct: 136 SNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPK 173


>Medtr7g091420.1 | structural maintenance of chromosomes protein |
           HC | chr7:36130079-36133932 | 20130731
          Length = 399

 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 9/158 (5%)

Query: 10  IHRLEMENFKSYKGFQVIGPFY-DFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLK 68
           I  + M NFKSY G Q +GPF+  F+A++GPNG+GKSN++DA+ FV G R  Q R  ++ 
Sbjct: 11  IKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQRRLNKVS 70

Query: 69  DLIYAFDDREKEQRGR-RAFVRLVYQLANNS-------EIQFTRTITSAGASEYRIDGNL 120
           +LI+   D           + + +  L + +       + + TR      +S+Y I+   
Sbjct: 71  ELIHNSTDHHNLDSAEVSVYFQEILDLEDGTHKAVSGRDFKITRVAFRDNSSKYYINNIS 130

Query: 121 VNWDIYNAKLKSLGILVKARNFLVFQGDVESIASKNPK 158
            N+     KLK  G+ +    FL+ QG+VE I+   PK
Sbjct: 131 SNFTEVTNKLKEKGVDLDNNRFLILQGEVEQISLMKPK 168


>Medtr8g037325.1 | structural maintenance of chromosomes protein |
           HC | chr8:13910705-13922893 | 20130731
          Length = 1175

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 26/178 (14%)

Query: 10  IHRLEMENFKSYKGFQVIGPFYD--FTAIIGPNGAGKSNLMDAISFVLGVRT-GQLRGAQ 66
           I  + +E FKSY    V+ P +D  F AI G NG+GKSN++D+I FVLG+    Q+R + 
Sbjct: 3   IKEICLEGFKSYATRTVV-PGFDRFFNAITGLNGSGKSNILDSICFVLGITNLTQVRCSN 61

Query: 67  LKDLIY--------------AFDDREKEQRGRRAFVRLVYQLANNSEIQFTRTITSAGAS 112
           L++L+Y               FD+ E   RGR     L Y+   +SEI  TR I   G +
Sbjct: 62  LQELVYKQGQAGITKATVSIVFDNSE---RGRSP---LGYEA--HSEITVTRQIVVGGRN 113

Query: 113 EYRIDGNLVNWDIYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGS 170
           +Y I+G L           S+ + V   +FL+ QG +  + +  P E+  ++E+ +G+
Sbjct: 114 KYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGT 171


>Medtr1g051825.1 | structural maintenance of chromosomes protein |
           HC | chr1:20727826-20747759 | 20130731
          Length = 1228

 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 107/221 (48%), Gaps = 36/221 (16%)

Query: 394 LREEKELLDRQQHADSEAQKNSEENLQQLRNRESELNSQEEQMQARLKKIVDSS---AKN 450
           L++E + L+R    ++  +K   E +Q+L +   E+   +E +Q+R   I       AK+
Sbjct: 419 LQKETDDLERVLSTNTTQEKKLMEEIQRLND---EMRGCDENIQSRKANITTLESLIAKS 475

Query: 451 KDGLANLKKELRVMQDKHRDSKKKYENLKLKIGELENQLRELKADRHENERD------AK 504
           ++  ++ K E   +QDK +       +L  K  EL  ++ +L+A+  + E++        
Sbjct: 476 RERFSDYKVERDSLQDKKK-------SLWSKENELTAEIDKLRAEVEKAEKNLDHAIPGD 528

Query: 505 LSQAVETLKRL-----FQGVHGRITELCRPTQKKYNLAVTVAMGKFMDAVVVEDEKTGKE 559
           + + + +++++       GVHG I EL     +K+  AV V  G  +  VVVE++    E
Sbjct: 529 VRRGLNSVRKICKTQNISGVHGPIIELLN-CDEKFFTAVEVTAGNSLFHVVVENDDKSTE 587

Query: 560 CIKYLKDQRLPPQTFIPL-----------QSIRVKPIMERL 589
            IK+L  Q+    TFIPL           QS  V P++++L
Sbjct: 588 IIKHLNQQKGGRVTFIPLNRVNAPRVTYPQSSDVIPLLKKL 628