Miyakogusa Predicted Gene
- Lj5g3v1027080.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1027080.1 tr|G7IG88|G7IG88_MEDTR Poly(RC)-binding protein
OS=Medicago truncatula GN=MTR_2g038020 PE=4
SV=1,59.72,0.000000000000007,Eukaryotic type KH-domain (KH-domain type
I),NULL; KH DOMAIN-CONTAINING PROTEIN,NULL; KH DOMAIN
CONT,CUFF.54707.1
(550 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g070380.1 | poly(rC)-binding-like protein | HC | chr1:3114... 658 0.0
Medtr1g070380.3 | poly(rC)-binding-like protein | HC | chr1:3114... 653 0.0
Medtr1g070380.2 | poly(rC)-binding-like protein | HC | chr1:3114... 653 0.0
Medtr7g115340.2 | poly(rC)-binding-like protein | HC | chr7:4764... 426 e-119
Medtr7g115340.1 | poly(rC)-binding-like protein | HC | chr7:4764... 424 e-118
Medtr4g127380.1 | poly(rC)-binding-like protein | HC | chr4:5286... 197 2e-50
Medtr2g038020.1 | poly(rC)-binding-like protein | HC | chr2:1650... 189 8e-48
Medtr6g012630.1 | RNA-binding KH domain protein | HC | chr6:3864... 123 5e-28
Medtr6g012630.5 | RNA-binding KH domain protein | HC | chr6:3864... 123 5e-28
Medtr6g012630.2 | RNA-binding KH domain protein | HC | chr6:3864... 123 5e-28
Medtr6g012630.4 | RNA-binding KH domain protein | HC | chr6:3864... 123 5e-28
Medtr6g012630.3 | RNA-binding KH domain protein | HC | chr6:3864... 122 7e-28
Medtr7g011080.2 | RNA-binding KH domain protein | HC | chr7:2893... 112 8e-25
Medtr7g011080.1 | RNA-binding KH domain protein | HC | chr7:2893... 112 8e-25
Medtr4g093650.1 | RNA-binding KH domain protein | HC | chr4:3709... 100 3e-21
Medtr3g110650.2 | RNA-binding KH domain protein | HC | chr3:5171... 98 2e-20
Medtr3g110650.1 | RNA-binding KH domain protein | HC | chr3:5171... 98 2e-20
Medtr3g095520.1 | poly(rC)-binding-like protein, putative | HC |... 95 1e-19
Medtr7g080630.4 | poly(rC)-binding-like protein | HC | chr7:3070... 93 7e-19
Medtr7g080630.1 | poly(rC)-binding-like protein | HC | chr7:3070... 93 7e-19
Medtr7g080630.2 | poly(rC)-binding-like protein | HC | chr7:3070... 93 7e-19
Medtr7g080630.5 | poly(rC)-binding-like protein | HC | chr7:3070... 93 9e-19
Medtr7g080630.3 | poly(rC)-binding-like protein | HC | chr7:3070... 92 1e-18
Medtr4g008080.1 | RNA-binding KH domain protein | HC | chr4:1379... 91 2e-18
Medtr2g009650.1 | RNA-binding KH domain protein | HC | chr2:2001... 86 7e-17
Medtr2g019090.2 | RNA-binding KH domain protein | HC | chr2:6163... 81 2e-15
Medtr5g031720.1 | RNA-binding KH domain protein | HC | chr5:1360... 78 2e-14
Medtr2g019090.1 | RNA-binding KH domain protein | HC | chr2:6163... 77 6e-14
Medtr3g091800.1 | RNA-binding KH domain protein | HC | chr3:4179... 73 9e-13
Medtr1g016760.1 | RNA-binding KH domain protein | HC | chr1:4457... 63 7e-10
Medtr5g008420.1 | RNA-binding KH domain protein | HC | chr5:1773... 55 2e-07
Medtr3g104270.1 | RNA-binding KH domain protein | HC | chr3:4803... 55 3e-07
Medtr1g090773.2 | binding to TOMV RNA 1L (long form) protein | H... 53 6e-07
Medtr1g090773.3 | binding to TOMV RNA 1L (long form) protein | H... 53 6e-07
Medtr3g104280.1 | RNA-binding KH domain protein | HC | chr3:4804... 52 1e-06
>Medtr1g070380.1 | poly(rC)-binding-like protein | HC |
chr1:31149691-31143604 | 20130731
Length = 567
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/585 (63%), Positives = 406/585 (69%), Gaps = 53/585 (9%)
Query: 1 MSGEQFDGQDAGYVPENPDDFPQNNSDEIEGGNVIDD---------------------DS 39
MSGE FDG+D GYVPEN + FPQ +SDE + G+VIDD +S
Sbjct: 1 MSGEHFDGEDVGYVPENME-FPQIHSDEHDEGDVIDDSGFPQLHHDDESGFPQLLHDDES 59
Query: 40 GFXXXXXXXXX--------XXXXXXXXXXAEDANPPEGEFDGGHDVVEDLPGNDVDDSLP 91
GF EDAN PE + +G HDV E+ P ++DD++
Sbjct: 60 GFPQLQQDDESGFPQLQHDDIDDEQVGSLGEDANLPEDQLEG-HDV-ENFP--EIDDAIA 115
Query: 92 PELTEEQEQHDGVITEEQEQHDGGGVTEENFGSPEKQVPGEDLKGSEIKKWPGWPGENVF 151
LTEE +EQHD G ENFGSPEK+VPGED KG EIKKW GWPGENVF
Sbjct: 116 NALTEE--------NTNEEQHDEGNHVTENFGSPEKKVPGEDSKGIEIKKWYGWPGENVF 167
Query: 152 RMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERSIPPA 211
RMLVPAQKVGSIIGRKGEFIKKITEET+AR+KILDGP GTAERAVMVSAKEEP+R IPPA
Sbjct: 168 RMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVSAKEEPDRPIPPA 227
Query: 212 VEGLLRVHKHVVN-VDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQDATGC 270
VEGLLRVHK V N V +PAD+A GAGR ITRLLVADTQAGSLIGKQGSTIK +QD+TGC
Sbjct: 228 VEGLLRVHKQVANVVSEPADTAQGAGRPSITRLLVADTQAGSLIGKQGSTIKIFQDSTGC 287
Query: 271 NLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRKFLVDRSIVGVFETQMQX 330
N+R+LGS+HLP+FALRDDS+VEIQGE AGVHKAVEL+ALHLRKFLVDRSIVGVFETQMQ
Sbjct: 288 NIRILGSEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLRKFLVDRSIVGVFETQMQR 347
Query: 331 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYMPPPSHNYDNYYPPADLPPM 390
P HNYDNYYPPADLPP+
Sbjct: 348 QDVRGNQNMPPHQPWGPPPQGFPAHGGGGGPAFPPNPQYMP--PPHNYDNYYPPADLPPI 405
Query: 391 DKHLHQGPPPAYARDAPMGIHPSSAPPQQSGVTKVTHHMQIPLSYADAVIGASGANISYI 450
DKH+HQGPPPAYARDA +GIH S PQQSG TKVT HMQIPLS+ADAVIGASGANISYI
Sbjct: 406 DKHMHQGPPPAYARDASLGIHSSGGQPQQSGGTKVTQHMQIPLSFADAVIGASGANISYI 465
Query: 451 RRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQNFM-----AEAASAQQDQMSG 505
RRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQNFM A AA+ QD M G
Sbjct: 466 RRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQNFMAEAANAVAAAQAQDHMGG 525
Query: 506 QINQGYNSYPTNAPVYASXXXXXXXXXXXXXXXXXXXVYGTNYGY 550
+NQGYNSYPTNAPVYAS VYGTNYGY
Sbjct: 526 TVNQGYNSYPTNAPVYAS---PQSGAAGHAPPADYGSVYGTNYGY 567
>Medtr1g070380.3 | poly(rC)-binding-like protein | HC |
chr1:31149687-31143883 | 20130731
Length = 568
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/586 (63%), Positives = 406/586 (69%), Gaps = 54/586 (9%)
Query: 1 MSGEQFDGQDAGYVPENPDDFPQNNSDEIEGGNVIDD---------------------DS 39
MSGE FDG+D GYVPEN + FPQ +SDE + G+VIDD +S
Sbjct: 1 MSGEHFDGEDVGYVPENME-FPQIHSDEHDEGDVIDDSGFPQLHHDDESGFPQLLHDDES 59
Query: 40 GFXXXXXXXXX--------XXXXXXXXXXAEDANPPEGEFDGGHDVVEDLPGNDVDDSLP 91
GF EDAN PE + +G HDV E+ P ++DD++
Sbjct: 60 GFPQLQQDDESGFPQLQHDDIDDEQVGSLGEDANLPEDQLEG-HDV-ENFP--EIDDAIA 115
Query: 92 PELTEEQEQHDGVITEEQEQHDGGGVTEENFGSPEKQVPGEDLKGSEIKKWPGWPGENVF 151
LTEE +EQHD G ENFGSPEK+VPGED KG EIKKW GWPGENVF
Sbjct: 116 NALTEE--------NTNEEQHDEGNHVTENFGSPEKKVPGEDSKGIEIKKWYGWPGENVF 167
Query: 152 RMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERSIPPA 211
RMLVPAQKVGSIIGRKGEFIKKITEET+AR+KILDGP GTAERAVMVSAKEEP+R IPPA
Sbjct: 168 RMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVSAKEEPDRPIPPA 227
Query: 212 VEGLLRVHKHVVN-VDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQDATGC 270
VEGLLRVHK V N V +PAD+A GAGR ITRLLVADTQAGSLIGKQGSTIK +QD+TGC
Sbjct: 228 VEGLLRVHKQVANVVSEPADTAQGAGRPSITRLLVADTQAGSLIGKQGSTIKIFQDSTGC 287
Query: 271 NLRVLGS-DHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRKFLVDRSIVGVFETQMQ 329
N+R+LGS +HLP+FALRDDS+VEIQGE AGVHKAVEL+ALHLRKFLVDRSIVGVFETQMQ
Sbjct: 288 NIRILGSAEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLRKFLVDRSIVGVFETQMQ 347
Query: 330 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYMPPPSHNYDNYYPPADLPP 389
P HNYDNYYPPADLPP
Sbjct: 348 RQDVRGNQNMPPHQPWGPPPQGFPAHGGGGGPAFPPNPQYMP--PPHNYDNYYPPADLPP 405
Query: 390 MDKHLHQGPPPAYARDAPMGIHPSSAPPQQSGVTKVTHHMQIPLSYADAVIGASGANISY 449
+DKH+HQGPPPAYARDA +GIH S PQQSG TKVT HMQIPLS+ADAVIGASGANISY
Sbjct: 406 IDKHMHQGPPPAYARDASLGIHSSGGQPQQSGGTKVTQHMQIPLSFADAVIGASGANISY 465
Query: 450 IRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQNFM-----AEAASAQQDQMS 504
IRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQNFM A AA+ QD M
Sbjct: 466 IRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQNFMAEAANAVAAAQAQDHMG 525
Query: 505 GQINQGYNSYPTNAPVYASXXXXXXXXXXXXXXXXXXXVYGTNYGY 550
G +NQGYNSYPTNAPVYAS VYGTNYGY
Sbjct: 526 GTVNQGYNSYPTNAPVYAS---PQSGAAGHAPPADYGSVYGTNYGY 568
>Medtr1g070380.2 | poly(rC)-binding-like protein | HC |
chr1:31149683-31143883 | 20130731
Length = 568
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/586 (63%), Positives = 406/586 (69%), Gaps = 54/586 (9%)
Query: 1 MSGEQFDGQDAGYVPENPDDFPQNNSDEIEGGNVIDD---------------------DS 39
MSGE FDG+D GYVPEN + FPQ +SDE + G+VIDD +S
Sbjct: 1 MSGEHFDGEDVGYVPENME-FPQIHSDEHDEGDVIDDSGFPQLHHDDESGFPQLLHDDES 59
Query: 40 GFXXXXXXXXX--------XXXXXXXXXXAEDANPPEGEFDGGHDVVEDLPGNDVDDSLP 91
GF EDAN PE + +G HDV E+ P ++DD++
Sbjct: 60 GFPQLQQDDESGFPQLQHDDIDDEQVGSLGEDANLPEDQLEG-HDV-ENFP--EIDDAIA 115
Query: 92 PELTEEQEQHDGVITEEQEQHDGGGVTEENFGSPEKQVPGEDLKGSEIKKWPGWPGENVF 151
LTEE +EQHD G ENFGSPEK+VPGED KG EIKKW GWPGENVF
Sbjct: 116 NALTEE--------NTNEEQHDEGNHVTENFGSPEKKVPGEDSKGIEIKKWYGWPGENVF 167
Query: 152 RMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERSIPPA 211
RMLVPAQKVGSIIGRKGEFIKKITEET+AR+KILDGP GTAERAVMVSAKEEP+R IPPA
Sbjct: 168 RMLVPAQKVGSIIGRKGEFIKKITEETRARVKILDGPQGTAERAVMVSAKEEPDRPIPPA 227
Query: 212 VEGLLRVHKHVVN-VDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQDATGC 270
VEGLLRVHK V N V +PAD+A GAGR ITRLLVADTQAGSLIGKQGSTIK +QD+TGC
Sbjct: 228 VEGLLRVHKQVANVVSEPADTAQGAGRPSITRLLVADTQAGSLIGKQGSTIKIFQDSTGC 287
Query: 271 NLRVLGS-DHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRKFLVDRSIVGVFETQMQ 329
N+R+LGS +HLP+FALRDDS+VEIQGE AGVHKAVEL+ALHLRKFLVDRSIVGVFETQMQ
Sbjct: 288 NIRILGSAEHLPIFALRDDSIVEIQGEPAGVHKAVELIALHLRKFLVDRSIVGVFETQMQ 347
Query: 330 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYMPPPSHNYDNYYPPADLPP 389
P HNYDNYYPPADLPP
Sbjct: 348 RQDVRGNQNMPPHQPWGPPPQGFPAHGGGGGPAFPPNPQYMP--PPHNYDNYYPPADLPP 405
Query: 390 MDKHLHQGPPPAYARDAPMGIHPSSAPPQQSGVTKVTHHMQIPLSYADAVIGASGANISY 449
+DKH+HQGPPPAYARDA +GIH S PQQSG TKVT HMQIPLS+ADAVIGASGANISY
Sbjct: 406 IDKHMHQGPPPAYARDASLGIHSSGGQPQQSGGTKVTQHMQIPLSFADAVIGASGANISY 465
Query: 450 IRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQNFM-----AEAASAQQDQMS 504
IRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQNFM A AA+ QD M
Sbjct: 466 IRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQNFMAEAANAVAAAQAQDHMG 525
Query: 505 GQINQGYNSYPTNAPVYASXXXXXXXXXXXXXXXXXXXVYGTNYGY 550
G +NQGYNSYPTNAPVYAS VYGTNYGY
Sbjct: 526 GTVNQGYNSYPTNAPVYAS---PQSGAAGHAPPADYGSVYGTNYGY 568
>Medtr7g115340.2 | poly(rC)-binding-like protein | HC |
chr7:47649475-47656173 | 20130731
Length = 442
Score = 426 bits (1095), Expect = e-119, Method: Compositional matrix adjust.
Identities = 239/417 (57%), Positives = 285/417 (68%), Gaps = 19/417 (4%)
Query: 140 KKWPGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVS 199
KKWPGWPGE+VFRMLVPAQKVG IIGRKGEFIKKI EET+AR+KILDGPPGT+ERAVMVS
Sbjct: 38 KKWPGWPGESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTSERAVMVS 97
Query: 200 AKEEPERSIPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGS 259
AK+EP S+PPAV+GLL+ HK +++ D+ SG ++ T+ LV +QAGSLIGKQG
Sbjct: 98 AKDEPGSSLPPAVDGLLKAHKRLIDG---LDAPSGLAGKVSTKFLVPASQAGSLIGKQGG 154
Query: 260 TIKSYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRKFLVDRS 319
T+KS Q+A+ C +RVLG++ LPVFAL+DD VVE+ G+ GVHKAVE++A HL+KFLVDRS
Sbjct: 155 TVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIASHLKKFLVDRS 214
Query: 320 IVGVFETQMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYMPPPSHNYD 379
I+ +FE MQ PP D
Sbjct: 215 IIPIFEMSMQMANNHPVEHMPVPPPPHQSWGPPQGLPPNAGGGPGFGLAPQFMPPRRQVD 274
Query: 380 NYYPPADL-PPMDKHLHQGPPPAYARDAPMGIHPS----SAPPQQSGVTKVTHHMQIPLS 434
NYYPPA++ PP+DK H G AY RDA +G+H S SAP S VT++T MQIPLS
Sbjct: 275 NYYPPAEMPPPLDKQPHHG-ISAYGRDASIGVHASSNTQSAP---SMVTQITQQMQIPLS 330
Query: 435 YADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQNFMAE 494
YADAVIG +G NISYIRRASGA++TIQETRGVPGEMTVEISGTASQ+Q AQQL+QNFMAE
Sbjct: 331 YADAVIGTAGTNISYIRRASGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAE 390
Query: 495 AASAQQDQMSG-QINQGYNSYPTNAPVYASXXXXXXXXXXXXXXXXXXXVYGTNYGY 550
AA+ Q Q G +QGYNSYP ++ VYAS VYG NYGY
Sbjct: 391 AAAPAQQQTGGPPADQGYNSYPAHSSVYAS------PPSNPGHAGAYGAVYGANYGY 441
>Medtr7g115340.1 | poly(rC)-binding-like protein | HC |
chr7:47649189-47656173 | 20130731
Length = 510
Score = 424 bits (1090), Expect = e-118, Method: Compositional matrix adjust.
Identities = 239/417 (57%), Positives = 285/417 (68%), Gaps = 19/417 (4%)
Query: 140 KKWPGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVS 199
KKWPGWPGE+VFRMLVPAQKVG IIGRKGEFIKKI EET+AR+KILDGPPGT+ERAVMVS
Sbjct: 106 KKWPGWPGESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTSERAVMVS 165
Query: 200 AKEEPERSIPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGS 259
AK+EP S+PPAV+GLL+ HK +++ D+ SG ++ T+ LV +QAGSLIGKQG
Sbjct: 166 AKDEPGSSLPPAVDGLLKAHKRLIDG---LDAPSGLAGKVSTKFLVPASQAGSLIGKQGG 222
Query: 260 TIKSYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRKFLVDRS 319
T+KS Q+A+ C +RVLG++ LPVFAL+DD VVE+ G+ GVHKAVE++A HL+KFLVDRS
Sbjct: 223 TVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIASHLKKFLVDRS 282
Query: 320 IVGVFETQMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYMPPPSHNYD 379
I+ +FE MQ PP D
Sbjct: 283 IIPIFEMSMQMANNHPVEHMPVPPPPHQSWGPPQGLPPNAGGGPGFGLAPQFMPPRRQVD 342
Query: 380 NYYPPADL-PPMDKHLHQGPPPAYARDAPMGIHPS----SAPPQQSGVTKVTHHMQIPLS 434
NYYPPA++ PP+DK H G AY RDA +G+H S SAP S VT++T MQIPLS
Sbjct: 343 NYYPPAEMPPPLDKQPHHG-ISAYGRDASIGVHASSNTQSAP---SMVTQITQQMQIPLS 398
Query: 435 YADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQNFMAE 494
YADAVIG +G NISYIRRASGA++TIQETRGVPGEMTVEISGTASQ+Q AQQL+QNFMAE
Sbjct: 399 YADAVIGTAGTNISYIRRASGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAE 458
Query: 495 AASAQQDQMSG-QINQGYNSYPTNAPVYASXXXXXXXXXXXXXXXXXXXVYGTNYGY 550
AA+ Q Q G +QGYNSYP ++ VYAS VYG NYGY
Sbjct: 459 AAAPAQQQTGGPPADQGYNSYPAHSSVYAS------PPSNPGHAGAYGAVYGANYGY 509
>Medtr4g127380.1 | poly(rC)-binding-like protein | HC |
chr4:52864244-52858917 | 20130731
Length = 431
Score = 197 bits (501), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 97/188 (51%), Positives = 134/188 (71%), Gaps = 2/188 (1%)
Query: 140 KKWPGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVS 199
K+WPGWPG VFR++VP KVG IIGRKGE IKK EET ARI++LD P GT +R V++S
Sbjct: 35 KRWPGWPGHCVFRLIVPVVKVGIIIGRKGELIKKTCEETHARIRVLDAPVGTPDRIVLIS 94
Query: 200 AKEEPERSIPPAVEGLLRVHKHVVNVDQP-ADSASGAGRQIIT-RLLVADTQAGSLIGKQ 257
KE+ E + PA++ +LR+ K V + + ++ + AG + + RLLVA TQA +LIGKQ
Sbjct: 95 GKEDLEAPLSPAMDAILRIFKRVSGLSETDNNNTAAAGVALCSIRLLVASTQAINLIGKQ 154
Query: 258 GSTIKSYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRKFLVD 317
GS+IK+ Q+ TG +RVL D LP +A D+ ++++QGE+ V KA+E V HLRKFLVD
Sbjct: 155 GSSIKAIQENTGAVIRVLSGDELPSYAGADERIIDLQGETLKVLKALEAVVGHLRKFLVD 214
Query: 318 RSIVGVFE 325
S++ +FE
Sbjct: 215 SSVIPLFE 222
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Query: 420 SGVTKVTHHMQIPLSYADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTAS 479
S VT V MQIPLSYA+ +IG G NI YIRR SGA +T+QE+R VP E+ VEI GT++
Sbjct: 304 SIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESR-VPDEIIVEIKGTST 362
Query: 480 QIQAAQQLVQNFM 492
Q+Q AQQL+Q +
Sbjct: 363 QVQTAQQLIQEVI 375
>Medtr2g038020.1 | poly(rC)-binding-like protein | HC |
chr2:16509240-16516412 | 20130731
Length = 470
Score = 189 bits (479), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 92/188 (48%), Positives = 134/188 (71%), Gaps = 2/188 (1%)
Query: 140 KKWPGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVS 199
++WPGWPG+ VFR++VP KVG IIGRKG+ IKK+ +ETKAR+++LD G +R +++S
Sbjct: 61 QRWPGWPGDCVFRLIVPVGKVGGIIGRKGDLIKKLCDETKARVRVLDADLGIPDRIILIS 120
Query: 200 AKEEPERSIPPAVEGLLRVHKHVVNVDQPADSASG-AGRQIIT-RLLVADTQAGSLIGKQ 257
KEE E +I PA++ ++R+ K V + + G AG + + RLLVA TQA SLIGKQ
Sbjct: 121 GKEELEAAISPAMDAVIRIFKRVSGLSETDSENKGPAGVTLCSIRLLVASTQAISLIGKQ 180
Query: 258 GSTIKSYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRKFLVD 317
G+ I+S Q+++G ++RVL D + FA ++ +V++QGE+ V KA+E V HLRKFLVD
Sbjct: 181 GTIIRSIQESSGASVRVLSGDEVQYFATAEERIVDLQGEALMVLKALEAVIGHLRKFLVD 240
Query: 318 RSIVGVFE 325
SI+ V+E
Sbjct: 241 HSILPVYE 248
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
Query: 422 VTKVTHHMQIPLSYADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQI 481
VT V MQIPLSYA+ +IG G NI YIRR SGA +T+QE+R VP E+ VEI GT SQ+
Sbjct: 334 VTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESR-VPDEIVVEIKGTTSQV 392
Query: 482 QAAQQLVQNFMA 493
Q AQQL+Q ++
Sbjct: 393 QTAQQLIQEVIS 404
>Medtr6g012630.1 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 123 bits (308), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAK------ 201
+ VFR L P +K+GSIIGR GE +K++ ETKA+I+I + PG ER V V +
Sbjct: 46 DTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNT 105
Query: 202 -EEPERSIPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGST 260
++ ++ + PA + L ++H VV D +D G Q+ +LLV Q G ++GK G
Sbjct: 106 VDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQI 165
Query: 261 IKSYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHL 311
+++ + TG +R+L DH+P ALR D +V+I G++A V KA+ +A L
Sbjct: 166 VQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRL 216
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 5/171 (2%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERS 207
E R++ P +G +IG+ G I +I +++ A IK+ D + + +S KE E +
Sbjct: 288 EFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKGDDCLITISTKEFFEET 346
Query: 208 IPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQDA 267
P VE + + + ++ SG TRLLV+ ++ G LIGK GS I +
Sbjct: 347 FSPTVEAAVLLQPRC---SEKSERDSGI-ISFTTRLLVSSSRIGCLIGKGGSIITEMRRL 402
Query: 268 TGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRKFLVDR 318
T N+R+L ++LP A DD +V+I G+ A+ V LR L DR
Sbjct: 403 TKSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLRANLFDR 453
>Medtr6g012630.5 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 123 bits (308), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAK------ 201
+ VFR L P +K+GSIIGR GE +K++ ETKA+I+I + PG ER V V +
Sbjct: 46 DTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNT 105
Query: 202 -EEPERSIPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGST 260
++ ++ + PA + L ++H VV D +D G Q+ +LLV Q G ++GK G
Sbjct: 106 VDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQI 165
Query: 261 IKSYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHL 311
+++ + TG +R+L DH+P ALR D +V+I G++A V KA+ +A L
Sbjct: 166 VQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRL 216
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 5/171 (2%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERS 207
E R++ P +G +IG+ G I +I +++ A IK+ D + + +S KE E +
Sbjct: 288 EFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKGDDCLITISTKEFFEET 346
Query: 208 IPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQDA 267
P VE + + + ++ SG TRLLV+ ++ G LIGK GS I +
Sbjct: 347 FSPTVEAAVLLQPRC---SEKSERDSGI-ISFTTRLLVSSSRIGCLIGKGGSIITEMRRL 402
Query: 268 TGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRKFLVDR 318
T N+R+L ++LP A DD +V+I G+ A+ V LR L DR
Sbjct: 403 TKSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLRANLFDR 453
>Medtr6g012630.2 | RNA-binding KH domain protein | HC |
chr6:3864952-3868465 | 20130731
Length = 553
Score = 123 bits (308), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAK------ 201
+ VFR L P +K+GSIIGR GE +K++ ETKA+I+I + PG ER V V +
Sbjct: 46 DTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNT 105
Query: 202 -EEPERSIPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGST 260
++ ++ + PA + L ++H VV D +D G Q+ +LLV Q G ++GK G
Sbjct: 106 VDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQI 165
Query: 261 IKSYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHL 311
+++ + TG +R+L DH+P ALR D +V+I G++A V KA+ +A L
Sbjct: 166 VQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRL 216
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 5/171 (2%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERS 207
E R++ P +G +IG+ G I +I +++ A IK+ D + + +S KE E +
Sbjct: 288 EFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKGDDCLITISTKEFFEET 346
Query: 208 IPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQDA 267
P VE + + + ++ SG TRLLV+ ++ G LIGK GS I +
Sbjct: 347 FSPTVEAAVLLQPRC---SEKSERDSGI-ISFTTRLLVSSSRIGCLIGKGGSIITEMRRL 402
Query: 268 TGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRKFLVDR 318
T N+R+L ++LP A DD +V+I G+ A+ V LR L DR
Sbjct: 403 TKSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLRANLFDR 453
>Medtr6g012630.4 | RNA-binding KH domain protein | HC |
chr6:3864952-3867538 | 20130731
Length = 538
Score = 123 bits (308), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAK------ 201
+ VFR L P +K+GSIIGR GE +K++ ETKA+I+I + PG ER V V +
Sbjct: 46 DTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNT 105
Query: 202 -EEPERSIPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGST 260
++ ++ + PA + L ++H VV D +D G Q+ +LLV Q G ++GK G
Sbjct: 106 VDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQI 165
Query: 261 IKSYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHL 311
+++ + TG +R+L DH+P ALR D +V+I G++A V KA+ +A L
Sbjct: 166 VQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRL 216
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 5/171 (2%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERS 207
E R++ P +G +IG+ G I +I +++ A IK+ D + + +S KE E +
Sbjct: 288 EFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKGDDCLITISTKEFFEET 346
Query: 208 IPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQDA 267
P VE + + + ++ SG TRLLV+ ++ G LIGK GS I +
Sbjct: 347 FSPTVEAAVLLQPRC---SEKSERDSGI-ISFTTRLLVSSSRIGCLIGKGGSIITEMRRL 402
Query: 268 TGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRKFLVDR 318
T N+R+L ++LP A DD +V+I G+ A+ V LR L DR
Sbjct: 403 TKSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLRANLFDR 453
>Medtr6g012630.3 | RNA-binding KH domain protein | HC |
chr6:3864952-3867231 | 20130731
Length = 451
Score = 122 bits (307), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 102/171 (59%), Gaps = 7/171 (4%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMV-SAKEEP-- 204
+ VFR L P +K+GSIIGR GE +K++ ETKA+I+I + PG ER V V S+ +E
Sbjct: 46 DTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDETNT 105
Query: 205 ----ERSIPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGST 260
++ + PA + L ++H VV D +D G Q+ +LLV Q G ++GK G
Sbjct: 106 VDDGDKLVSPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQI 165
Query: 261 IKSYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHL 311
+++ + TG +R+L DH+P ALR D +V+I G++A V KA+ +A L
Sbjct: 166 VQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRL 216
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 74/145 (51%), Gaps = 5/145 (3%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERS 207
E R++ P +G +IG+ G I +I +++ A IK+ D + + +S KE E +
Sbjct: 288 EFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKV-DSSAKGDDCLITISTKEFFEET 346
Query: 208 IPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQDA 267
P VE + + + ++ SG TRLLV+ ++ G LIGK GS I +
Sbjct: 347 FSPTVEAAVLLQPRC---SEKSERDSGI-ISFTTRLLVSSSRIGCLIGKGGSIITEMRRL 402
Query: 268 TGCNLRVLGSDHLPVFALRDDSVVE 292
T N+R+L ++LP A DD +V+
Sbjct: 403 TKSNIRILSKENLPKIASDDDEMVQ 427
>Medtr7g011080.2 | RNA-binding KH domain protein | HC |
chr7:2893165-2900092 | 20130731
Length = 571
Score = 112 bits (281), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 102/178 (57%), Gaps = 14/178 (7%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAK------ 201
+ V+R L P +K+GSIIGR GE +K++ +TKA+I+I + PG ER V V +
Sbjct: 48 DTVYRYLCPVRKIGSIIGRGGEIVKQLRLDTKAKIRIGETVPGCDERVVTVYSVSDESND 107
Query: 202 -EEPERSIPPAVEGLLRVHKHVVNVD------QPADSASGAGRQIIT-RLLVADTQAGSL 253
E+ + PA++ L+R+H+ V+ D + D G ++T +LLVA Q G +
Sbjct: 108 FEDSGEFMCPAMDALVRIHQKVIAEDLRGVEDEDVDMEKVDGGDLVTAKLLVASDQIGCV 167
Query: 254 IGKQGSTIKSYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHL 311
IGK G +++ + TG +R+L D LP+ AL D +V+I GE A V KA+ VA L
Sbjct: 168 IGKGGQIVQNIRSETGAQIRILKDDRLPLCALNSDELVQISGEIAVVKKALIQVAARL 225
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 12/194 (6%)
Query: 125 PEKQVPGEDLKGSEIKKWPGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKI 184
P PG +GS +K++ R + P +G +IG+ G I +I +++ A IK+
Sbjct: 280 PRSMYPGSRDEGS-VKEFS-------VRFVCPTANIGGVIGKGGGIINQIRQDSGANIKV 331
Query: 185 LDGPPGTAERAVMVSAKEEPERSIPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLL 244
+ + +SA+E E +E + + + + SG +RLL
Sbjct: 332 DSSATEGDDCLIAISARELFEDPFSATIEAAVLLQPRC---SEKVERDSGI-LSFTSRLL 387
Query: 245 VADTQAGSLIGKQGSTIKSYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAV 304
V+ ++ G LIGK GS I + T N+R+L + LP A DD +V+I GE A+
Sbjct: 388 VSSSRIGCLIGKGGSIITEMRRLTKANIRILSKEDLPKIATEDDEMVQISGELDIAKDAL 447
Query: 305 ELVALHLRKFLVDR 318
V LR L D+
Sbjct: 448 LQVLTRLRANLFDK 461
>Medtr7g011080.1 | RNA-binding KH domain protein | HC |
chr7:2893165-2900092 | 20130731
Length = 571
Score = 112 bits (281), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 102/178 (57%), Gaps = 14/178 (7%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAK------ 201
+ V+R L P +K+GSIIGR GE +K++ +TKA+I+I + PG ER V V +
Sbjct: 48 DTVYRYLCPVRKIGSIIGRGGEIVKQLRLDTKAKIRIGETVPGCDERVVTVYSVSDESND 107
Query: 202 -EEPERSIPPAVEGLLRVHKHVVNVD------QPADSASGAGRQIIT-RLLVADTQAGSL 253
E+ + PA++ L+R+H+ V+ D + D G ++T +LLVA Q G +
Sbjct: 108 FEDSGEFMCPAMDALVRIHQKVIAEDLRGVEDEDVDMEKVDGGDLVTAKLLVASDQIGCV 167
Query: 254 IGKQGSTIKSYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHL 311
IGK G +++ + TG +R+L D LP+ AL D +V+I GE A V KA+ VA L
Sbjct: 168 IGKGGQIVQNIRSETGAQIRILKDDRLPLCALNSDELVQISGEIAVVKKALIQVAARL 225
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 12/194 (6%)
Query: 125 PEKQVPGEDLKGSEIKKWPGWPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKI 184
P PG +GS +K++ R + P +G +IG+ G I +I +++ A IK+
Sbjct: 280 PRSMYPGSRDEGS-VKEFS-------VRFVCPTANIGGVIGKGGGIINQIRQDSGANIKV 331
Query: 185 LDGPPGTAERAVMVSAKEEPERSIPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLL 244
+ + +SA+E E +E + + + + SG +RLL
Sbjct: 332 DSSATEGDDCLIAISARELFEDPFSATIEAAVLLQPRC---SEKVERDSGI-LSFTSRLL 387
Query: 245 VADTQAGSLIGKQGSTIKSYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAV 304
V+ ++ G LIGK GS I + T N+R+L + LP A DD +V+I GE A+
Sbjct: 388 VSSSRIGCLIGKGGSIITEMRRLTKANIRILSKEDLPKIATEDDEMVQISGELDIAKDAL 447
Query: 305 ELVALHLRKFLVDR 318
V LR L D+
Sbjct: 448 LQVLTRLRANLFDK 461
>Medtr4g093650.1 | RNA-binding KH domain protein | HC |
chr4:37099130-37092340 | 20130731
Length = 616
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 96/168 (57%), Gaps = 5/168 (2%)
Query: 147 GENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAER--AVMVSAKEEP 204
G VFR+L A ++G+ IG+ G IK + + T ARI+I D P ER V+V+ +
Sbjct: 18 GHVVFRLLCHASRIGAFIGKSGSVIKSLQQLTGARIRIDDAPVDCPERVIVVIVNLNGDG 77
Query: 205 ERSIPPAVEGLLRVHKHVVNVDQPADSASGAGRQIIT-RLLVADTQAGSLIGKQGSTIKS 263
+ S+ P E LL+V + +++V +G G ++++ RLLV QAG +IGK G +
Sbjct: 78 DVSLNPQ-EALLKVFERILDVAAAESDGNGVGDRVVSCRLLVNAGQAGGVIGKGGMVVAK 136
Query: 264 YQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHL 311
+ TGC +RVL +D LP D ++EIQG ++ V KA+ VA L
Sbjct: 137 IRADTGCRIRVL-NDKLPACTKPSDEIIEIQGIASSVKKALVAVAGRL 183
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 8/175 (4%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPP--GTAERAVMVSAKEEPE 205
E FR+L ++G+++G+ G +K + ET A I + GPP +R + ++A E PE
Sbjct: 265 EVTFRILCSGDRIGAVLGKGGSIVKALQNETGANISV--GPPVVECEDRLITITALENPE 322
Query: 206 RSIPPAVEGLLRVHKHVVN--VDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKS 263
PA E ++ V + +++ D S + +L+V Q G L+GK G+ +
Sbjct: 323 SRFSPAQEAVVLVFCRSIECCIEKVVDWRSNKESSVTAQLVVPSNQVGVLLGKGGAIVSE 382
Query: 264 YQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRK--FLV 316
+ AT ++R+ + +P A +D VV+I GE V A+ LR FL+
Sbjct: 383 MRKATWTSIRITRNGEVPKCASFNDQVVQISGELPNVRDALYNATRRLRDHIFLI 437
>Medtr3g110650.2 | RNA-binding KH domain protein | HC |
chr3:51710144-51714718 | 20130731
Length = 662
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 87/162 (53%), Gaps = 5/162 (3%)
Query: 151 FRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERSIPP 210
FR+L P++ VG++IG+ G IK + +ET + IK+++ PG+ + +++S P+ I P
Sbjct: 314 FRLLCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCIIIISGPAHPDDRISP 373
Query: 211 AVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQDATGC 270
E + RV + + S ++ R++V+ G L+GK GS I ++ +G
Sbjct: 374 VQEAIFRVQNRISRAMLDSKEHS-----MLARVIVSSKHIGCLLGKGGSIIAEMRNLSGA 428
Query: 271 NLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLR 312
++R+LG D P DD V+++ G VH A+ + LR
Sbjct: 429 HIRMLGKDKGPKCVSEDDEVIQVSGVIEAVHDALLQITTRLR 470
>Medtr3g110650.1 | RNA-binding KH domain protein | HC |
chr3:51710144-51714718 | 20130731
Length = 662
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 87/162 (53%), Gaps = 5/162 (3%)
Query: 151 FRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERSIPP 210
FR+L P++ VG++IG+ G IK + +ET + IK+++ PG+ + +++S P+ I P
Sbjct: 314 FRLLCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCIIIISGPAHPDDRISP 373
Query: 211 AVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQDATGC 270
E + RV + + S ++ R++V+ G L+GK GS I ++ +G
Sbjct: 374 VQEAIFRVQNRISRAMLDSKEHS-----MLARVIVSSKHIGCLLGKGGSIIAEMRNLSGA 428
Query: 271 NLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLR 312
++R+LG D P DD V+++ G VH A+ + LR
Sbjct: 429 HIRMLGKDKGPKCVSEDDEVIQVSGVIEAVHDALLQITTRLR 470
>Medtr3g095520.1 | poly(rC)-binding-like protein, putative | HC |
chr3:43645125-43645682 | 20130731
Length = 74
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/62 (75%), Positives = 50/62 (80%), Gaps = 3/62 (4%)
Query: 105 ITEE---QEQHDGGGVTEENFGSPEKQVPGEDLKGSEIKKWPGWPGENVFRMLVPAQKVG 161
+TEE +EQHD G ENFGSPEK+VPGED KG EIKKW GWPGENVFRM VPAQKVG
Sbjct: 7 LTEEHTNEEQHDEGNHVTENFGSPEKKVPGEDSKGIEIKKWYGWPGENVFRMFVPAQKVG 66
Query: 162 SI 163
SI
Sbjct: 67 SI 68
>Medtr7g080630.4 | poly(rC)-binding-like protein | HC |
chr7:30700618-30707328 | 20130731
Length = 379
Score = 93.2 bits (230), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 97/170 (57%), Gaps = 7/170 (4%)
Query: 150 VFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERSIP 209
+FR++VP++++G +IG++G I+KI E T+A IKI D ER +++S+K+ E +
Sbjct: 101 IFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKDNDE-MVT 159
Query: 210 PAVEGLLRVHKHVVNVDQPADSAS----GAGRQIITRLLVADTQAGSLIGKQGSTIKSYQ 265
A + L ++ ++ D + AS G RLL+A +QAG LIG G I+ +
Sbjct: 160 DAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSGQNIEKLR 219
Query: 266 DATGCNLRVLGSDHLPVFAL--RDDSVVEIQGESAGVHKAVELVALHLRK 313
+++G + VL LP+ A D VV++ G+ + V KA+E + LR+
Sbjct: 220 NSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRE 269
>Medtr7g080630.1 | poly(rC)-binding-like protein | HC |
chr7:30700618-30706480 | 20130731
Length = 379
Score = 93.2 bits (230), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 97/170 (57%), Gaps = 7/170 (4%)
Query: 150 VFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERSIP 209
+FR++VP++++G +IG++G I+KI E T+A IKI D ER +++S+K+ E +
Sbjct: 101 IFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKDNDE-MVT 159
Query: 210 PAVEGLLRVHKHVVNVDQPADSAS----GAGRQIITRLLVADTQAGSLIGKQGSTIKSYQ 265
A + L ++ ++ D + AS G RLL+A +QAG LIG G I+ +
Sbjct: 160 DAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSGQNIEKLR 219
Query: 266 DATGCNLRVLGSDHLPVFAL--RDDSVVEIQGESAGVHKAVELVALHLRK 313
+++G + VL LP+ A D VV++ G+ + V KA+E + LR+
Sbjct: 220 NSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRE 269
>Medtr7g080630.2 | poly(rC)-binding-like protein | HC |
chr7:30700618-30707393 | 20130731
Length = 379
Score = 93.2 bits (230), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 97/170 (57%), Gaps = 7/170 (4%)
Query: 150 VFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERSIP 209
+FR++VP++++G +IG++G I+KI E T+A IKI D ER +++S+K+ E +
Sbjct: 101 IFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKDNDE-MVT 159
Query: 210 PAVEGLLRVHKHVVNVDQPADSAS----GAGRQIITRLLVADTQAGSLIGKQGSTIKSYQ 265
A + L ++ ++ D + AS G RLL+A +QAG LIG G I+ +
Sbjct: 160 DAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSGQNIEKLR 219
Query: 266 DATGCNLRVLGSDHLPVFAL--RDDSVVEIQGESAGVHKAVELVALHLRK 313
+++G + VL LP+ A D VV++ G+ + V KA+E + LR+
Sbjct: 220 NSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRE 269
>Medtr7g080630.5 | poly(rC)-binding-like protein | HC |
chr7:30700621-30706773 | 20130731
Length = 306
Score = 92.8 bits (229), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 97/170 (57%), Gaps = 7/170 (4%)
Query: 150 VFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERSIP 209
+FR++VP++++G +IG++G I+KI E T+A IKI D ER +++S+K+ E +
Sbjct: 101 IFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKDNDEM-VT 159
Query: 210 PAVEGLLRVHKHVVNVDQPADSAS----GAGRQIITRLLVADTQAGSLIGKQGSTIKSYQ 265
A + L ++ ++ D + AS G RLL+A +QAG LIG G I+ +
Sbjct: 160 DAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSGQNIEKLR 219
Query: 266 DATGCNLRVLGSDHLPVFAL--RDDSVVEIQGESAGVHKAVELVALHLRK 313
+++G + VL LP+ A D VV++ G+ + V KA+E + LR+
Sbjct: 220 NSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRE 269
>Medtr7g080630.3 | poly(rC)-binding-like protein | HC |
chr7:30700618-30706480 | 20130731
Length = 312
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 97/170 (57%), Gaps = 7/170 (4%)
Query: 150 VFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERSIP 209
+FR++VP++++G +IG++G I+KI E T+A IKI D ER +++S+K+ E +
Sbjct: 101 IFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKDNDE-MVT 159
Query: 210 PAVEGLLRVHKHVVNVDQPADSAS----GAGRQIITRLLVADTQAGSLIGKQGSTIKSYQ 265
A + L ++ ++ D + AS G RLL+A +QAG LIG G I+ +
Sbjct: 160 DAEKALEQIANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIGMSGQNIEKLR 219
Query: 266 DATGCNLRVLGSDHLPVFAL--RDDSVVEIQGESAGVHKAVELVALHLRK 313
+++G + VL LP+ A D VV++ G+ + V KA+E + LR+
Sbjct: 220 NSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLRE 269
>Medtr4g008080.1 | RNA-binding KH domain protein | HC |
chr4:1379696-1384039 | 20130731
Length = 605
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERS 207
E V++ML KVGS+IG+ G ++ + ET A I+I+D P + ER V++SA E ++
Sbjct: 226 EVVYKMLCQQDKVGSLIGKGGSVVRALQNETGASIQIVDAGPDSDERVVVISALENSDQK 285
Query: 208 IPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQDA 267
PA + ++RVH + + +A ++ RLLV Q G L+GK G I +
Sbjct: 286 HSPAQDAVIRVHGRLTEIGFEHSNA------VVARLLVRSPQVGCLLGKGGHVISEMRRV 339
Query: 268 TGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRKFLV 316
TG N+R+ + + + ++ VV++ G V A+ + +R+ ++
Sbjct: 340 TGANIRIFSKEQIKYIS-HNEEVVQVIGTLQSVQDALFHITSRIRETII 387
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 78/165 (47%), Gaps = 10/165 (6%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERS 207
+ VFR+L PA K S++ G+ +K + ++ + D ER V++ + E +
Sbjct: 17 DTVFRILCPAAKSDSLLSLSGDGVKILIDDFAGDVTSSD------ERIVVIISAAAEESA 70
Query: 208 IPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQDA 267
A L+RV + +V D ++ + + RLL Q G ++G+ G ++ +
Sbjct: 71 AQLA---LIRVFERIVEKDNNEENNKKSNSSVGCRLLAPSYQVGCVLGRGGKIVEKIRQE 127
Query: 268 TGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLR 312
+G +R+L DH P+ D ++I G V KA+ V+ L+
Sbjct: 128 SGAQVRILPKDHSPI-PPPGDEFIQITGNFNAVKKALLAVSSCLQ 171
>Medtr2g009650.1 | RNA-binding KH domain protein | HC |
chr2:2001720-2009761 | 20130731
Length = 766
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 15/180 (8%)
Query: 147 GENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPE- 205
G FR+L + ++G +IG+ G IK + T A+I+I D P + +R +MV +
Sbjct: 46 GHVAFRLLCNSSRIGGVIGKSGTVIKNLQLTTGAKIRIEDSPNESPDRVIMVIGASNIDG 105
Query: 206 ----RS---------IPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGS 252
RS + A E LLRV ++ V + R + RL+ QAGS
Sbjct: 106 KVMVRSHSGDGEAIEVSKAQEALLRVFDRILEVAAEMEGIELGDRTVSCRLVADSAQAGS 165
Query: 253 LIGKQGSTIKSYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLR 312
+IGK G ++ + TGC + V D+LP D V+EI+G + V KA+ V+ +L+
Sbjct: 166 VIGKGGKVVEKIKKDTGCKIWVC-KDNLPACISSPDEVIEIEGSVSSVKKALVAVSRNLQ 224
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 85/170 (50%), Gaps = 2/170 (1%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERS 207
E F+++ ++G +IG+ G I+ + ET A + + +R + ++A E PE
Sbjct: 330 EITFKIICSNDRIGGVIGKGGNIIRALQSETGATVSVGPSVAECEDRLITITASESPESR 389
Query: 208 IPPAVEGLLRVHKHVV--NVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQ 265
PA + + V V +++ DS G + +L+V+ Q G L+GK G + +
Sbjct: 390 YSPAQKATVLVFSRSVEAGIEKGIDSGLNTGSSVTAQLVVSSNQVGCLLGKGGVIVSEMR 449
Query: 266 DATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRKFL 315
ATG ++R++G+D + A +D VV+I GE + V A+ LR L
Sbjct: 450 KATGASIRIVGTDKVSKCASDNDQVVQISGEFSNVQDALYNATGRLRDNL 499
>Medtr2g019090.2 | RNA-binding KH domain protein | HC |
chr2:6163891-6155394 | 20130731
Length = 628
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 95/180 (52%), Gaps = 16/180 (8%)
Query: 151 FRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSA---------- 200
+R+L P + +GS+IG+ G+ I I +E++A++K++D PG R + +
Sbjct: 44 YRILCPNEVIGSVIGKNGKVINSIRQESRAKVKVVDPFPGAKHRVITIFCHVKNKEEIEI 103
Query: 201 --KEEPERSIPPAVEGLLRVHKHVVN-VDQPADSASGAGRQIITRLLVADTQAGSLIGKQ 257
+ + E+ + A + L++VH + N ++ DS + ++LV +Q+ LIGK
Sbjct: 104 EDEFDNEKPLCAAQDALIKVHSAISNSIETAGDSEKKRKNKDECQILVPSSQSAILIGKA 163
Query: 258 GSTIKSYQDATGCNLRVL---GSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRKF 314
G+TIK + T N++V+ +D A+ D+ V I GES V +A+ V+ + KF
Sbjct: 164 GATIKQLRVKTRTNIKVVPKDAADPEHSCAMEFDNFVLITGESEAVKRALFAVSTIMYKF 223
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 10/166 (6%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERS 207
E + RML P+ K+G +IG+ G IK++ + + ARI++ D E + ++A E
Sbjct: 312 ELIVRMLCPSDKIGQLIGKGGGTIKRMRQASGARIEVDDSKARHDECLITITATESTSDL 371
Query: 208 IPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQDA 267
AVE +L + + + + D S RLLV G +IG+ G+ I +
Sbjct: 372 KSVAVEAVLLLQEKINDEDDAPVS---------IRLLVPSKVIGCIIGRSGAIINEIRKR 422
Query: 268 TGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRK 313
T ++++ S+ P +A +D +VE+ GE V A+ + L LR+
Sbjct: 423 TKADIQISRSNK-PKYADDNDELVEVVGEVDCVRDALIQIVLRLRE 467
>Medtr5g031720.1 | RNA-binding KH domain protein | HC |
chr5:13608841-13602499 | 20130731
Length = 596
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 145 WPGENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKE-- 202
PG+ FR++ + VG +IG G + ++ ET +I D GT +R ++V
Sbjct: 35 LPGQIAFRLVCHSSTVGGLIGSSGSIVSQLRRETGCKIHCEDAVVGTDDRVILVIGSMSD 94
Query: 203 -------EPERSIPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIG 255
+ E + A EG++RV V + +S G ++ +LL +Q G+++G
Sbjct: 95 RKGIVLGDREMEVSNAQEGVVRVFDRVWGL----ESEKGGNGEVYGKLLAHSSQVGAIVG 150
Query: 256 KQGSTIKSYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLR 312
K G I + ++ +G N+RV + H A +D+ ++ I GES V KA+ V+ L+
Sbjct: 151 KGGKNISNIRNNSGSNIRVCPAPHC---AAKDEELILITGESLAVKKALIYVSYCLQ 204
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 13/170 (7%)
Query: 150 VFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPP--GTAERAVMVSAKEEPERS 207
VFR+L GS+IG+KG ++ T E + I+ PP ER V +SA E E S
Sbjct: 276 VFRLLCSNNVAGSVIGKKGSIVR--TFEIRTGASIVFAPPLGQYEERIVTISAFENLESS 333
Query: 208 IPPAVEGLLRVHK-----HVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIK 262
PA + ++ V H+ N QPA + + RLL+ + L G +G I
Sbjct: 334 NSPAQDAVILVFTRIAEDHIRNGFQPATAVESP---VTARLLITTSTLHLLTGNEGQVIS 390
Query: 263 SYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLR 312
+ +G ++++L + +P A +D VV+I G V A+ + +R
Sbjct: 391 ELRQVSGADIQLLHGEPIP-NASDNDVVVQITGGYRCVENALRKITSIIR 439
>Medtr2g019090.1 | RNA-binding KH domain protein | HC |
chr2:6163835-6158039 | 20130731
Length = 631
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 95/180 (52%), Gaps = 17/180 (9%)
Query: 151 FRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSA---------- 200
+R+L P + +GS+IG+ G+ I I +E++A++K++D PG R + +
Sbjct: 44 YRILCPNEVIGSVIGKNGKVINSIRQESRAKVKVVDPFPGAKHRVITIFCHVKNKEEIEI 103
Query: 201 --KEEPERSIPPAVEGLLRVHKHVVN-VDQPADSASGAGRQIITRLLVADTQAGSLIGKQ 257
+ + E+ + A + L++VH + N ++ DS + ++LV +Q+ LIGK
Sbjct: 104 EDEFDNEKPLCAAQDALIKVHSAISNSIETAGDSEKKRKNKDECQILVPSSQSAILIGKA 163
Query: 258 GSTIKSYQDATGCNLRVL---GSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRKF 314
G+TIK + T N++V+ +D A+ D+ V + GES V +A+ V+ + KF
Sbjct: 164 GATIKQLRVKTRTNIKVVPKDAADPEHSCAMEFDNFVLV-GESEAVKRALFAVSTIMYKF 222
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 83/166 (50%), Gaps = 10/166 (6%)
Query: 148 ENVFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERS 207
E + RML P+ K+G +IG+ G IK++ + + ARI++ D E + ++A E
Sbjct: 311 ELIVRMLCPSDKIGQLIGKGGGTIKRMRQASGARIEVDDSKARHDECLITITATESTSDL 370
Query: 208 IPPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQDA 267
AVE +L + + + + D S RLLV G +IG+ G+ I +
Sbjct: 371 KSVAVEAVLLLQEKINDEDDAPVS---------IRLLVPSKVIGCIIGRSGAIINEIRKR 421
Query: 268 TGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRK 313
T ++++ S+ P +A +D +VE+ GE V A+ + L LR+
Sbjct: 422 TKADIQISRSNK-PKYADDNDELVEVVGEVDCVRDALIQIVLRLRE 466
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%)
Query: 426 THHMQIPLSYADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQ 485
T M +P + V+G GAN++ IR+ SGA++ I E++ G+ ISGT+ + +AA+
Sbjct: 562 TLEMVVPANAVGKVMGKGGANLANIRKISGATVEISESKSYRGDRVALISGTSEEKRAAE 621
Query: 486 QLVQNFM 492
L+Q F+
Sbjct: 622 NLIQAFI 628
>Medtr3g091800.1 | RNA-binding KH domain protein | HC |
chr3:41793839-41789438 | 20130731
Length = 646
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 85/166 (51%), Gaps = 10/166 (6%)
Query: 150 VFRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVSAKEEPERSIP 209
+FR+L P +V I+G G ++ + + ++I D G+ E+ V+++++E P ++
Sbjct: 332 IFRILCPVDRVDRIVGESGGILELLQDRVGVDVQISDRVGGSDEQMVIITSEEGPNDTMF 391
Query: 210 PAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQDATG 269
PA E LL + H+V++ +DS I TRL+V + L GK S + + +TG
Sbjct: 392 PAQEALLHIQTHIVDL---SDSI------ITTRLIVPSSDIECLDGKNAS-LSEIERSTG 441
Query: 270 CNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRKFL 315
++++L + LP D +V+I GE + V LR ++
Sbjct: 442 ASVQILPREELPPCIANTDELVQIVGEIEAARNVILDVTAKLRSYV 487
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 13/176 (7%)
Query: 151 FRMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTAERAVMVS--AKEEPERSI 208
+R+L + G +IG+ G IK I + T A I + + G ER + +S + +P+ +
Sbjct: 65 YRLLCHDLRAGGVIGKSGSIIKSIRQHTGAWINVHEPVAGDEERIIEISDTRRRDPDGRM 124
Query: 209 P---PAVEGLLRVHKHVVNVD-------QPADSASGAGRQIITRLLVADTQAGSLIGKQG 258
P PA E LL +H+ ++ D G G+++ +RL+V+ GSL+GK G
Sbjct: 125 PQFSPAQEALLLIHERLLENDPGFEDEEDYGGGRGGGGKRVSSRLVVSKMHVGSLLGKGG 184
Query: 259 STIKSYQDATGCNLRVLGSD-HLPVFALRDDSVVEIQGESAGVHKAVELVALHLRK 313
I+ + T +R+L D +LP + +V++ G+ V A +++ LR+
Sbjct: 185 KIIEQMRIETKTQIRILPRDSYLPRCVSMSEEIVQVTGDIHNVKNAFLVISSRLRE 240
>Medtr1g016760.1 | RNA-binding KH domain protein | HC |
chr1:4457792-4464676 | 20130731
Length = 627
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 93/193 (48%), Gaps = 31/193 (16%)
Query: 152 RMLVPAQKVGSIIGRKGEFIKKITEETKARIKI---LDGPPGTAERAVMVSAKEEPERSI 208
++ +P +VG IIG+ GE IK + ++ A+I++ +D P + R V ++ +
Sbjct: 115 KIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSPNRLVELTGTSD----- 169
Query: 209 PPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLL------------VADTQAGSLIGK 256
A+ ++ K V+ A++ SG G ++TR + + + + G +IGK
Sbjct: 170 --AIATAEKLIKEVL-----AEAESG-GNGLVTRRMTGQGGADEFSMKIPNNKVGLIIGK 221
Query: 257 QGSTIKSYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELV--ALHLRKF 314
G TIKS Q TG ++V+ HLP + ++I+G S + A +LV L
Sbjct: 222 GGETIKSMQATTGARIQVI-PLHLPPGDTSTERTLKIEGTSEQIESAKQLVDSILSGENR 280
Query: 315 LVDRSIVGVFETQ 327
L + S+ G + Q
Sbjct: 281 LRNPSMSGGYSQQ 293
>Medtr5g008420.1 | RNA-binding KH domain protein | HC |
chr5:1773973-1764791 | 20130731
Length = 780
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 33/194 (17%)
Query: 152 RMLVPAQKVGSIIGRKGEFIKKITEETKARIKIL---DGPPGTAERAVMVSAKEEPERSI 208
++ VP+ KVG +IG+ G+ I+ + + A+I+I D P ++ R V + E
Sbjct: 188 KIEVPSNKVGVLIGKSGDTIRYLQYNSGAKIQITRDADADPHSSTRPVELIGTLE----- 242
Query: 209 PPAVEGLLRVHKHVVNVDQPADSASGAGRQIITRLL---------------VADTQAGSL 253
+++ ++ V+ A++ +G ++ R L V + + G +
Sbjct: 243 --SIDKAEKLMNAVI-----AEADAGGSPALVARGLSPAQAIVGSDQIQIQVPNEKVGLI 295
Query: 254 IGKQGSTIKSYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHLRK 313
IGK G TIKS Q TG ++++ HLP + V++ G+ + A E++ L +
Sbjct: 296 IGKGGETIKSLQTKTGARIQLI-PQHLPEGDDSKERTVQVTGDKRQIEIAQEMIKEVLSQ 354
Query: 314 FLVDRSIVGVFETQ 327
+ RS G F Q
Sbjct: 355 PI--RSSSGGFGQQ 366
>Medtr3g104270.1 | RNA-binding KH domain protein | HC |
chr3:48031833-48027169 | 20130731
Length = 605
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 81/166 (48%), Gaps = 19/166 (11%)
Query: 152 RMLVPAQKVGSIIGRKGEFIKKITEETKARIKI---LDGPPGTAERAVMVSAKEEPERSI 208
++ +P +VG +IG+ GE IK + ++ A+I++ +D P + R V +
Sbjct: 89 KIEIPNGRVGVLIGKGGETIKYLQMQSGAKIQVTRDMDADPNSQTRMVEL-------MGT 141
Query: 209 PPAVEGLLRVHKHVVNVDQPADSASGAGRQIITR-------LLVADTQAGSLIGKQGSTI 261
P AV ++ V+ + A ++ G R+++ + + + + + G +IGK G TI
Sbjct: 142 PDAVSSAEKLINEVL-AEAEAGASGGGTRRMVAQSGGDEFVMQIPNNKVGLIIGKGGETI 200
Query: 262 KSYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELV 307
KS Q +TG ++V+ H P + ++I G + A +LV
Sbjct: 201 KSMQASTGARIQVI-PLHPPPGDTSTERTLKIDGTPDQIESAKQLV 245
>Medtr1g090773.2 | binding to TOMV RNA 1L (long form) protein | HC |
chr1:40791432-40785065 | 20130731
Length = 334
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 16/165 (9%)
Query: 152 RMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGP---PGTAERAVMVS-AKEEPERS 207
R LV GS+IG+ G I ++ ARI++ PGT +R +MVS A E R+
Sbjct: 39 RFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNNEFFPGTTDRIIMVSGAINEVLRA 98
Query: 208 IPPAVEGLL-RVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQD 266
+ + LL +H N +P RL+V + G +IGK G+TI+S+ +
Sbjct: 99 VELILSKLLSELHSEDDNDVEPKTKV---------RLIVPNGSCGGIIGKGGATIRSFIE 149
Query: 267 ATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHL 311
+ +++ D+ + ++D +V + G + ++L+ L
Sbjct: 150 ESQAGIKISPQDN--SYYGQNDRIVTVTGTLDEQMRGIDLIVSKL 192
>Medtr1g090773.3 | binding to TOMV RNA 1L (long form) protein | HC |
chr1:40791432-40785065 | 20130731
Length = 334
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 16/165 (9%)
Query: 152 RMLVPAQKVGSIIGRKGEFIKKITEETKARIKILDGP---PGTAERAVMVS-AKEEPERS 207
R LV GS+IG+ G I ++ ARI++ PGT +R +MVS A E R+
Sbjct: 39 RFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNNEFFPGTTDRIIMVSGAINEVLRA 98
Query: 208 IPPAVEGLL-RVHKHVVNVDQPADSASGAGRQIITRLLVADTQAGSLIGKQGSTIKSYQD 266
+ + LL +H N +P RL+V + G +IGK G+TI+S+ +
Sbjct: 99 VELILSKLLSELHSEDDNDVEPKTKV---------RLIVPNGSCGGIIGKGGATIRSFIE 149
Query: 267 ATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELVALHL 311
+ +++ D+ + ++D +V + G + ++L+ L
Sbjct: 150 ESQAGIKISPQDN--SYYGQNDRIVTVTGTLDEQMRGIDLIVSKL 192
>Medtr3g104280.1 | RNA-binding KH domain protein | HC |
chr3:48040831-48036380 | 20130731
Length = 605
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 80/166 (48%), Gaps = 19/166 (11%)
Query: 152 RMLVPAQKVGSIIGRKGEFIKKITEETKARIKI---LDGPPGTAERAVMVSAKEEPERSI 208
++ +P +VG +IG+ GE IK + ++ A+I++ +D P + R V +
Sbjct: 89 KIEIPNGRVGVLIGKGGETIKYLQMQSGAKIQVTRDMDADPNSQTRMVEL-------MGT 141
Query: 209 PPAVEGLLRVHKHVVNVDQPADSASGAGRQIITR-------LLVADTQAGSLIGKQGSTI 261
P AV ++ V+ + A ++ G R+++ + + + + + G +IGK G TI
Sbjct: 142 PDAVSSAEKLINEVL-AEAEAGASVGGTRRMVAQSGGDEFVMQIPNNKVGLIIGKGGETI 200
Query: 262 KSYQDATGCNLRVLGSDHLPVFALRDDSVVEIQGESAGVHKAVELV 307
K Q +TG ++V+ H P + ++I G + A +LV
Sbjct: 201 KGMQASTGARIQVI-PLHPPPGDTSTERTLKIDGTPDQIESAKQLV 245