Miyakogusa Predicted Gene

Lj5g3v1015870.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1015870.1 Non Characterized Hit- tr|I3SNQ1|I3SNQ1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.34,0,Ribosomal_S19,Ribosomal protein S19/S15; no
description,Ribosomal protein S19, superfamily; rpsS_arc,CUFF.54710.1
         (151 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g070450.1 | 40S ribosomal protein S15-4 | HC | chr1:312461...   293   3e-80
Medtr8g105110.1 | 40S ribosomal protein S15-4 | HC | chr8:443273...   290   3e-79
Medtr4g075450.1 | 40S ribosomal protein S15-4 | HC | chr4:287898...   264   2e-71

>Medtr1g070450.1 | 40S ribosomal protein S15-4 | HC |
           chr1:31246169-31248565 | 20130731
          Length = 152

 Score =  293 bits (751), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 147/152 (96%), Positives = 149/152 (98%), Gaps = 1/152 (0%)

Query: 1   MADVETDVAA-GVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKP 59
           MADVE +VAA GVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFS+RARRRFQRGLTRKP
Sbjct: 1   MADVEPEVAAQGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSSRARRRFQRGLTRKP 60

Query: 60  MALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 119
           MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 120 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152


>Medtr8g105110.1 | 40S ribosomal protein S15-4 | HC |
           chr8:44327360-44325261 | 20130731
          Length = 154

 Score =  290 bits (743), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 148/154 (96%), Positives = 148/154 (96%), Gaps = 3/154 (1%)

Query: 1   MADVETDVAA---GVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTR 57
           MADVE D AA   GVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTR
Sbjct: 1   MADVEVDAAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTR 60

Query: 58  KPMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 117
           KPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM
Sbjct: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120

Query: 118 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151
           IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154


>Medtr4g075450.1 | 40S ribosomal protein S15-4 | HC |
           chr4:28789840-28789382 | 20130731
          Length = 152

 Score =  264 bits (675), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 143/152 (94%), Positives = 146/152 (96%), Gaps = 1/152 (0%)

Query: 1   MADVETDVAA-GVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKP 59
           MADVE +VAA GV KKRTFKKFSFRGVDLDALLDM TDELVKLFSARARRRF+RGLTRKP
Sbjct: 1   MADVEPEVAAHGVAKKRTFKKFSFRGVDLDALLDMPTDELVKLFSARARRRFRRGLTRKP 60

Query: 60  MALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 119
           MALIKKLRKAKREAP GEKPEPVR HLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPPGEKPEPVRNHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 120 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151
           HYLAEFSISYKPVKHGRPGIGAT+SSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATNSSRFIPLK 152