Miyakogusa Predicted Gene
- Lj5g3v1015780.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1015780.1 tr|D7LYD9|D7LYD9_ARALL Prenylated rab receptor 2
OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAFT_9,40.27,4e-19,PRA1,Prenylated rab acceptor PRA1;
seg,NULL; PRENYLATED RAB ACCEPTOR 1-RELATED,NULL,CUFF.54673.1
(196 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g096220.1 | PRA1 family protein | HC | chr7:38592570-38591... 89 3e-18
Medtr1g080760.1 | PRA1 (prenylated RAB acceptor) family protein ... 74 8e-14
Medtr1g080760.3 | PRA1 (prenylated RAB acceptor) family protein ... 74 8e-14
Medtr1g080760.2 | PRA1 (prenylated RAB acceptor) family protein ... 74 8e-14
Medtr1g070480.1 | PRA1 family protein | HC | chr1:31282735-31283... 70 9e-13
Medtr1g093090.1 | PRA1 family protein | HC | chr1:33781981-33782... 65 4e-11
Medtr2g100260.1 | PRA1 (prenylated RAB acceptor) family protein ... 57 1e-08
Medtr5g083490.1 | PRA1 (prenylated RAB acceptor) family protein ... 54 9e-08
Medtr5g083490.2 | PRA1 (prenylated RAB acceptor) family protein ... 54 9e-08
Medtr8g016150.1 | PRA1 family protein | HC | chr8:5396635-539578... 52 3e-07
Medtr6g092690.1 | PRA1 (prenylated RAB acceptor) family protein ... 48 5e-06
Medtr0562s0010.1 | PRA1 (prenylated RAB acceptor) family protein... 48 5e-06
Medtr4g014060.1 | PRA1 (prenylated RAB acceptor) family protein ... 48 5e-06
>Medtr7g096220.1 | PRA1 family protein | HC | chr7:38592570-38591375
| 20130731
Length = 201
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 62/138 (44%)
Query: 32 TRRPWEEFFTLHSLTRPYSLGEASLRVKHNLRHFLGNYTMVLLFILFVSLIWHPVSIIXX 91
TRRPWEE F L+S TRPYSL EA+ RVK N+ HF NY +++LF+LF+SL+WHP+SII
Sbjct: 37 TRRPWEEVFALYSFTRPYSLTEATSRVKCNINHFRVNYIILILFVLFLSLLWHPISIIVF 96
Query: 92 XXXXXXXXXXXXXXXXXXXXXSRTVDYRFIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 151
VD R
Sbjct: 97 LITLIAWFFLYFFRDEPIVLFGHVVDDRASAAVLAVVTIVALGFTGVWVNVLVSIAVGVV 156
Query: 152 XXXXXXXFRSTEDLYVDE 169
FRSTEDLYVDE
Sbjct: 157 IVVLHGAFRSTEDLYVDE 174
>Medtr1g080760.1 | PRA1 (prenylated RAB acceptor) family protein |
HC | chr1:35918114-35920354 | 20130731
Length = 194
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 60/136 (44%)
Query: 34 RPWEEFFTLHSLTRPYSLGEASLRVKHNLRHFLGNYTMVLLFILFVSLIWHPVSIIXXXX 93
R W EFF+L SL+RPYS +A LR++HNL +F NYT +L I+F+SL+WHPVS+I
Sbjct: 35 RSWREFFSLSSLSRPYSYDDAMLRLRHNLTYFQFNYTTTILLIVFLSLLWHPVSMIVFLI 94
Query: 94 XXXXXXXXXXXXXXXXXXXSRTVDYRFIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 153
+RT+D R +
Sbjct: 95 LLVAWFFLYFSRNGPLVVFNRTLDDRIVICGLGVVSVVGLVATHVGVNVLVALIVGVVVV 154
Query: 154 XXXXXFRSTEDLYVDE 169
FR EDLYVD+
Sbjct: 155 GLHGSFRVIEDLYVDQ 170
>Medtr1g080760.3 | PRA1 (prenylated RAB acceptor) family protein |
HC | chr1:35918114-35920415 | 20130731
Length = 194
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 60/136 (44%)
Query: 34 RPWEEFFTLHSLTRPYSLGEASLRVKHNLRHFLGNYTMVLLFILFVSLIWHPVSIIXXXX 93
R W EFF+L SL+RPYS +A LR++HNL +F NYT +L I+F+SL+WHPVS+I
Sbjct: 35 RSWREFFSLSSLSRPYSYDDAMLRLRHNLTYFQFNYTTTILLIVFLSLLWHPVSMIVFLI 94
Query: 94 XXXXXXXXXXXXXXXXXXXSRTVDYRFIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 153
+RT+D R +
Sbjct: 95 LLVAWFFLYFSRNGPLVVFNRTLDDRIVICGLGVVSVVGLVATHVGVNVLVALIVGVVVV 154
Query: 154 XXXXXFRSTEDLYVDE 169
FR EDLYVD+
Sbjct: 155 GLHGSFRVIEDLYVDQ 170
>Medtr1g080760.2 | PRA1 (prenylated RAB acceptor) family protein |
HC | chr1:35918114-35920415 | 20130731
Length = 194
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 60/136 (44%)
Query: 34 RPWEEFFTLHSLTRPYSLGEASLRVKHNLRHFLGNYTMVLLFILFVSLIWHPVSIIXXXX 93
R W EFF+L SL+RPYS +A LR++HNL +F NYT +L I+F+SL+WHPVS+I
Sbjct: 35 RSWREFFSLSSLSRPYSYDDAMLRLRHNLTYFQFNYTTTILLIVFLSLLWHPVSMIVFLI 94
Query: 94 XXXXXXXXXXXXXXXXXXXSRTVDYRFIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 153
+RT+D R +
Sbjct: 95 LLVAWFFLYFSRNGPLVVFNRTLDDRIVICGLGVVSVVGLVATHVGVNVLVALIVGVVVV 154
Query: 154 XXXXXFRSTEDLYVDE 169
FR EDLYVD+
Sbjct: 155 GLHGSFRVIEDLYVDQ 170
>Medtr1g070480.1 | PRA1 family protein | HC | chr1:31282735-31283563
| 20130731
Length = 193
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 76/172 (44%), Gaps = 1/172 (0%)
Query: 23 RATNASNFPTRRPWEEFFTLHSLTRPYSLGEASLRVKHNLRHFLGNYTMVLLFILFVSLI 82
RAT SN+PTRRPW+ FF+ S T P+SL E +LR+K NL HF NY +++LFILF+SL+
Sbjct: 21 RATTPSNYPTRRPWQNFFSPQSFTLPHSLFETTLRIKRNLNHFRINYAIIILFILFLSLL 80
Query: 83 WHPVSIIXXXXXXXXXXXXXXXXXXXXXXXSRTVDYRFIXXXXXXXXXXXXXXXXXXXXX 142
+HP+S+I T+D RF+
Sbjct: 81 YHPLSLIVFLVVFAVWFLLFFFRDRPVVLFRFTIDDRFLLVLLSTLTIVALVFTGVWLNV 140
Query: 143 XXXXXXXXXXXXXXXXFRSTEDLYVDEXXX-XXXXXXXXXXXXPTKRTGYNR 193
FRS +DLY+DE +KRTGY R
Sbjct: 141 LVSVLVGSAVVVLHAAFRSIDDLYLDEEEIFDGDLLSVVGGSFNSKRTGYTR 192
>Medtr1g093090.1 | PRA1 family protein | HC |
chr1:33781981-33782826 | 20130731
Length = 181
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 40/58 (68%)
Query: 32 TRRPWEEFFTLHSLTRPYSLGEASLRVKHNLRHFLGNYTMVLLFILFVSLIWHPVSII 89
TR PW EF + +L+ P S EA+ RV NL FL NYT + LFIL +SL++HP++I+
Sbjct: 21 TRHPWSEFLSFSTLSLPSSFSEATTRVGINLTRFLFNYTFIFLFILLISLVYHPLAIV 78
>Medtr2g100260.1 | PRA1 (prenylated RAB acceptor) family protein |
HC | chr2:43059090-43060141 | 20130731
Length = 188
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 39/58 (67%)
Query: 32 TRRPWEEFFTLHSLTRPYSLGEASLRVKHNLRHFLGNYTMVLLFILFVSLIWHPVSII 89
TRRPW+ FF + S P + +A R K N+ F NYT++L+ ILF+SL++HP S+I
Sbjct: 35 TRRPWKLFFNVQSFNLPRNFNDAISRYKINICFFEMNYTIILVIILFLSLLFHPTSLI 92
>Medtr5g083490.1 | PRA1 (prenylated RAB acceptor) family protein |
HC | chr5:36034293-36033649 | 20130731
Length = 214
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 30 FPTRRPWEEFFTLHSLTRPYSLGEASLRVKHNLRHFLGNYTMVLLFILFVSLIWHPVS 87
F RRPW E S++RP +L EA R++ N +F NY +++F L VSLI HP S
Sbjct: 48 FSQRRPWSELIDRSSISRPETLAEAYSRIRKNFTYFRVNYLTLIIFALAVSLITHPFS 105
>Medtr5g083490.2 | PRA1 (prenylated RAB acceptor) family protein |
HC | chr5:36034293-36033649 | 20130731
Length = 214
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 30 FPTRRPWEEFFTLHSLTRPYSLGEASLRVKHNLRHFLGNYTMVLLFILFVSLIWHPVS 87
F RRPW E S++RP +L EA R++ N +F NY +++F L VSLI HP S
Sbjct: 48 FSQRRPWSELIDRSSISRPETLAEAYSRIRKNFTYFRVNYLTLIIFALAVSLITHPFS 105
>Medtr8g016150.1 | PRA1 family protein | HC | chr8:5396635-5395781
| 20130731
Length = 180
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 42/62 (67%)
Query: 28 SNFPTRRPWEEFFTLHSLTRPYSLGEASLRVKHNLRHFLGNYTMVLLFILFVSLIWHPVS 87
+ TRRPW+ F + SL P + EA RV+ N+ +F NYTMV+L ILF+SL+WHP S
Sbjct: 29 AGLGTRRPWKTMFDIRSLGIPTGVPEAISRVRVNISYFRMNYTMVMLLILFLSLLWHPYS 88
Query: 88 II 89
+I
Sbjct: 89 LI 90
>Medtr6g092690.1 | PRA1 (prenylated RAB acceptor) family protein |
HC | chr6:34903018-34902413 | 20130731
Length = 201
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 28 SNFPTRRPWEEFFTLHSLTRPYSLGEASLRVKHNLRHFLGNYTMVLLFILFVSLIWHPVS 87
N RPW+E P S + R+ N +HF NY + +L +F+SL+ HP+S
Sbjct: 31 DNIGVTRPWKEMIQFSHFKLPSSFYDTIQRINTNAKHFRANYVITMLLTIFLSLLEHPIS 90
Query: 88 II 89
+I
Sbjct: 91 LI 92
>Medtr0562s0010.1 | PRA1 (prenylated RAB acceptor) family protein |
HC | scaffold0562:30-710 | 20130731
Length = 226
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 33 RRPWEEFFTLHSLTRPYSLGEASLRVKHNLRHFLGNYTMVLLFILFVSLIWHPVSII 89
RRPW E + ++P S +A+LRV+ N +F NY V+ IL VSL+ +P S+I
Sbjct: 59 RRPWTELVDRSAFSKPESFSDATLRVRKNYSYFRVNYYAVVAGILAVSLLTNPFSLI 115
>Medtr4g014060.1 | PRA1 (prenylated RAB acceptor) family protein |
HC | chr4:3898587-3900131 | 20130731
Length = 226
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 33 RRPWEEFFTLHSLTRPYSLGEASLRVKHNLRHFLGNYTMVLLFILFVSLIWHPVSII 89
RRPW E + ++P S +A+LRV+ N +F NY V+ IL VSL+ +P S+I
Sbjct: 59 RRPWTELVDRSAFSKPESFSDATLRVRKNYSYFRVNYYAVVAGILAVSLLTNPFSLI 115