Miyakogusa Predicted Gene

Lj5g3v1015150.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1015150.1 Non Characterized Hit- tr|I1GQB1|I1GQB1_BRADI
Uncharacterized protein OS=Brachypodium distachyon GN=,31.34,2e-18,no
description,Nucleic acid-binding, OB-fold; SSB,Primosome
PriB/single-strand DNA-binding; SINGLE-S,gene.g60977.t1.1
         (375 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g070840.1 | single-stranded DNA-binding protein | HC | chr...   399   e-111
Medtr1g021080.1 | organellar single-stranded DNA-binding protein...   150   2e-36
Medtr6g092780.1 | organellar single-stranded DNA-binding protein...    76   5e-14

>Medtr1g070840.1 | single-stranded DNA-binding protein | HC |
           chr1:31376098-31372434 | 20130731
          Length = 291

 Score =  399 bits (1024), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/301 (68%), Positives = 231/301 (76%), Gaps = 24/301 (7%)

Query: 87  MAIEQALSSSTTTTFRNLLTFPKTPISKPKFQFPCS------PSHSNLKLKLKFKCSSMS 140
           MA+EQ +S S+T  FRNL TFP+ P   PKF+ P S      P H N  LK    CS+  
Sbjct: 1   MALEQTVSLSSTR-FRNLTTFPQNPNFIPKFKLPFSTTLSSKPIHRNFNLK----CSNSI 55

Query: 141 TN---ASYPKPSEIPWQKELCNSVSLIGTVGAPVEIKHFPSGKVASWTRLAVKKNATQTS 197
           TN   ASYPKP EI W K+L NSV+LIG V  P+EIKH PSGKV +WTRL+VKKNA+Q S
Sbjct: 56  TNNGAASYPKPPEISWNKDLSNSVNLIGFVANPIEIKHLPSGKVVAWTRLSVKKNASQMS 115

Query: 198 WVNLTFWDELAHVAFQHVQKGHQIHVSGRLVADTVETDEGKQQTYYKVVAQELNFIDRSF 257
           W++LTFWDELAHVA QHVQKGHQIHVSGRLV DTV++ +GKQQTYYKVVAQ+LNFIDRS 
Sbjct: 116 WIHLTFWDELAHVASQHVQKGHQIHVSGRLVTDTVDSVDGKQQTYYKVVAQQLNFIDRSD 175

Query: 258 SQVNSQDQDSDFMMS-GNGKSYMFSRKAGYAANS-TGSVMELWQAFFANPGEWWDNRNKK 315
           S V S DQD DF+ S  NGK      KA YA N  TGSV+ELWQAFFANPGEWWDNR  K
Sbjct: 176 SPVRSHDQDFDFITSDDNGK------KASYATNGMTGSVVELWQAFFANPGEWWDNRRNK 229

Query: 316 RNPKAPDFKHKDTGEALWIEGRSTPSWVNSQLEIMDSRMGSFTGQ--RMPVDMVTTDEIF 373
           RNPKAPDFKHKDTGEALWI+GRSTP WV SQLEI+D RMGS+TGQ  RMPVDMV+ DE+ 
Sbjct: 230 RNPKAPDFKHKDTGEALWIDGRSTPPWVKSQLEILDMRMGSYTGQNGRMPVDMVSADEML 289

Query: 374 S 374
           S
Sbjct: 290 S 290


>Medtr1g021080.1 | organellar single-stranded DNA-binding protein |
           HC | chr1:6250091-6256004 | 20130731
          Length = 268

 Score =  150 bits (380), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 90/231 (38%), Positives = 125/231 (54%), Gaps = 25/231 (10%)

Query: 145 YPKPSEIPWQKELCNSVSLIGTVGAPVEIKHFPS--GKVASWTRLAVKKNATQTSWVNLT 202
           + +P+ I W+  L NS S IG+V    E+KH  S  G    +T L V+K      WV L 
Sbjct: 59  FQRPATIRWKPRLENSASFIGSVAR--EVKHVNSKFGDFGVYTTLRVQKPDRSPFWVLLM 116

Query: 203 FWDELAHVAFQHVQKGHQIHVSGRLVADTVETDEGKQQTYYKVVAQELNFIDRSFSQVNS 262
            W+ +A +A++H++    I VSG L     ++ +G     YK++ +ELNF+ RS   +  
Sbjct: 117 MWNNVAEIAYEHLKPNDLICVSGYL-----DSFDGNSDLGYKLMVKELNFVARS---LGY 168

Query: 263 QDQDSDFMMSGNGKSYMFSRKAGYAANSTGSVMELWQAFFANPGEWWDNRNKKRNPKAPD 322
           +D + +    G         KAG    + G+ + LWQ FFANP EWWD R  K NPK PD
Sbjct: 169 EDHEKEHKFEG--------AKAG--NQNYGNPLHLWQVFFANPNEWWDQRKNKLNPKQPD 218

Query: 323 FKHKDTGEALWIEGRSTPSWVNSQLEIMDSRM--GSFTGQRMPVDMVTTDE 371
           FKHKDTGEALW+  +  P WV  QL+++DS+   G F G R  V     DE
Sbjct: 219 FKHKDTGEALWL-SKHNPPWVTKQLKLLDSKFSEGGFAGCRSRVTSWVYDE 268


>Medtr6g092780.1 | organellar single-stranded DNA-binding protein |
           HC | chr6:34938025-34943859 | 20130731
          Length = 490

 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 42/63 (66%), Gaps = 4/63 (6%)

Query: 281 SRKAGYAANSTGSVMELWQAFFANPGEWWDNRNKKRNPKAPDFKHKDTGEALWIEGRSTP 340
           S K+  A +S G   E W     NP +WWDNR  K+NPK PDFKHKDTGEALW+ G  +P
Sbjct: 409 SVKSKQAKDSKGD--ESWNDLLQNPAKWWDNRLDKKNPKGPDFKHKDTGEALWLRG--SP 464

Query: 341 SWV 343
           SWV
Sbjct: 465 SWV 467



 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 39/56 (69%), Gaps = 2/56 (3%)

Query: 296 ELWQAFFANPGEWWDNRNKKRNPKAPDFKHKDTGEALWIEGRSTPSWVNSQLEIMD 351
           E W     NP +WWDNR  K+  +APDFKHKDTG  LW+  R +PSWV+S+L+ ++
Sbjct: 351 ESWNDLLQNPAKWWDNRVDKKYARAPDFKHKDTGVGLWL--RDSPSWVSSRLKELE 404



 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 7/197 (3%)

Query: 140 STNASYPKPSEIPWQKELCNSVSLIGTVGAPVEIKHFPSGKVASWTRLAVKKNATQTSWV 199
           S+ +   KP+EIP+Q +L NSV+LIGTV  P+  +    G  ++ T +    +      +
Sbjct: 60  SSKSKLQKPTEIPFQPKLANSVNLIGTVNKPIHFQTSTDGNPSAATVITRLGHDPSQFLI 119

Query: 200 NLTFWDELAHVAFQHVQKGHQIHVSGRLVADTVETDEGKQQTY-YKVVAQELNFIDRSFS 258
            L F  +LA  A  H++    +HV G+L  +  +    K Q Y ++V  Q LNF++  + 
Sbjct: 120 PLVFHGDLALTAQFHLKLNDVVHVEGQLSTEDDQIKLDKPQQYQFQVKVQSLNFVE-GYP 178

Query: 259 QVN----SQDQDSDFMMSGNGKSYMFSRKAGYAANST-GSVMELWQAFFANPGEWWDNRN 313
           +V     +  + SD            S K  ++  +      + W+     P +W    +
Sbjct: 179 RVKKASLTSKEKSDIEDESENDEIKSSEKDIHSEKTEQHDTRKSWRDVINKPSQWKAVHS 238

Query: 314 KKRNPKAPDFKHKDTGE 330
            K +PK  DF+ K  GE
Sbjct: 239 PKESPKNADFESKTEGE 255



 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 287 AANSTGSVMELWQAFFANPGEWWDNRNKKR----NPKAPDFKHKDTGEALWIEGRS 338
           A   TGS+   W     +P +WWD R+ KR    NPK PDFK KD   ++W++  S
Sbjct: 267 AKKYTGSLSSTWGDLLDDPKKWWDFRDSKRNGSVNPKYPDFKRKDGNVSIWLDKAS 322