Miyakogusa Predicted Gene

Lj5g3v1015130.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1015130.1 Non Characterized Hit- tr|C0JP12|C0JP12_LOTJA
Putative basic helix-loop-helix protein BHLH4
OS=Lotus,96.14,0,seg,NULL; helix loop helix domain,Helix-loop-helix
domain; HLH, helix-loop-helix DNA-binding
domain,,NODE_31649_length_1513_cov_169.750824.path2.1
         (285 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g070870.1 | basic helix loop helix protein BHLH4 | HC | ch...   398   e-111
Medtr1g070870.2 | basic helix loop helix protein BHLH4 | HC | ch...   392   e-109
Medtr1g080890.1 | transcription factor UNE12-like protein | HC |...   209   3e-54
Medtr4g131160.1 | BHLH transcription factor | HC | chr4:54719229...   148   7e-36
Medtr4g131160.2 | BHLH transcription factor | HC | chr4:54719229...   148   7e-36
Medtr1g072530.1 | helix loop helix DNA-binding domain protein | ...    60   3e-09
Medtr7g111320.1 | phytochrome-interacting factor 3.1 | HC | chr7...    54   1e-07
Medtr1g017350.3 | transcription factor | HC | chr1:4807563-48009...    53   3e-07
Medtr1g017350.2 | transcription factor | HC | chr1:4805633-48009...    53   3e-07
Medtr1g017350.4 | transcription factor | HC | chr1:4805633-48009...    53   3e-07
Medtr1g017350.1 | transcription factor | HC | chr1:4805633-48009...    53   3e-07
Medtr1g017350.5 | transcription factor | HC | chr1:4805633-48009...    53   3e-07
Medtr7g053410.1 | BHLH transcription factor | HC | chr7:18808902...    52   5e-07
Medtr7g053410.2 | BHLH transcription factor | HC | chr7:18808900...    52   5e-07
Medtr1g084980.1 | phytochrome-interacting factor 3.1 | HC | chr1...    52   5e-07
Medtr8g012290.1 | BHLH transcription factor | HC | chr8:3449775-...    52   6e-07
Medtr8g012290.2 | BHLH transcription factor | HC | chr8:3449797-...    52   6e-07
Medtr7g099540.2 | transcription factor | HC | chr7:39933891-3993...    51   1e-06
Medtr5g005110.1 | transcription factor | HC | chr5:277903-279787...    49   4e-06

>Medtr1g070870.1 | basic helix loop helix protein BHLH4 | HC |
           chr1:31384531-31380237 | 20130731
          Length = 282

 Score =  398 bits (1023), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/287 (73%), Positives = 217/287 (75%), Gaps = 9/287 (3%)

Query: 1   MANHPSDAPAADDFLEQILGLPNFASADGTDASSLHAPMMLQLNSGDLAA---GGAGFHS 57
           MANHPSD PA DDFLEQILGLPNF SADGTDAS    PMMLQLNSGD A+    G GFH+
Sbjct: 1   MANHPSDTPA-DDFLEQILGLPNFTSADGTDAS----PMMLQLNSGDAASHLGAGGGFHA 55

Query: 58  PVYQLGLSLDQGKGGGFLKPDDASGSGNRFREDVVVGARHKNAFHGQXXXXXXXXXXXXX 117
           PVY LGLSLDQGKGGGFLKPD+ASGSG RFRED+V   R KN FHGQ             
Sbjct: 56  PVYHLGLSLDQGKGGGFLKPDEASGSGKRFREDLV-DTRPKNTFHGQPMPTTVPAAPQPP 114

Query: 118 XXXXXXXXXXGQATDPHSXXXXXXXXXXXXXXXXXQELVPSVNKTDRAVMLDEIVDYVKF 177
                     GQATDPHS                 QELVPSVNKTDRA MLDEIVDYVKF
Sbjct: 115 AMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKF 174

Query: 178 LRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVXXXXXXXXRNQPAWEKWSNDGTEKQVAKL 237
           LRLQVKVLSMSRLGGAGAVAPLVTDIPLSSV        RNQPAWEKWSNDGTEKQVAKL
Sbjct: 175 LRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSDSGRNQPAWEKWSNDGTEKQVAKL 234

Query: 238 MEENIGAAMQFLQSKALCIMPISLASAIYQSQPSENSSIVKPETSPP 284
           MEEN+GAAMQFLQSKALCIMPISLASAIYQSQPS+NSSIVKPET PP
Sbjct: 235 MEENVGAAMQFLQSKALCIMPISLASAIYQSQPSDNSSIVKPETIPP 281


>Medtr1g070870.2 | basic helix loop helix protein BHLH4 | HC |
           chr1:31384448-31380418 | 20130731
          Length = 285

 Score =  392 bits (1008), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/290 (72%), Positives = 217/290 (74%), Gaps = 12/290 (4%)

Query: 1   MANHPSDAPAADDFLEQILGLPNFASADGTDASSLHAPMMLQLNSGDLAA---GGAGFHS 57
           MANHPSD PA DDFLEQILGLPNF SADGTDAS    PMMLQLNSGD A+    G GFH+
Sbjct: 1   MANHPSDTPA-DDFLEQILGLPNFTSADGTDAS----PMMLQLNSGDAASHLGAGGGFHA 55

Query: 58  PVYQLGLSLDQGKGGGFLKPDDASGSGNRFREDVVVGARHKN---AFHGQXXXXXXXXXX 114
           PVY LGLSLDQGKGGGFLKPD+ASGSG RFRED+V   R KN    FHGQ          
Sbjct: 56  PVYHLGLSLDQGKGGGFLKPDEASGSGKRFREDLV-DTRPKNFLQTFHGQPMPTTVPAAP 114

Query: 115 XXXXXXXXXXXXXGQATDPHSXXXXXXXXXXXXXXXXXQELVPSVNKTDRAVMLDEIVDY 174
                        GQATDPHS                 QELVPSVNKTDRA MLDEIVDY
Sbjct: 115 QPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDY 174

Query: 175 VKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVXXXXXXXXRNQPAWEKWSNDGTEKQV 234
           VKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSV        RNQPAWEKWSNDGTEKQV
Sbjct: 175 VKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSDSGRNQPAWEKWSNDGTEKQV 234

Query: 235 AKLMEENIGAAMQFLQSKALCIMPISLASAIYQSQPSENSSIVKPETSPP 284
           AKLMEEN+GAAMQFLQSKALCIMPISLASAIYQSQPS+NSSIVKPET PP
Sbjct: 235 AKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPSDNSSIVKPETIPP 284


>Medtr1g080890.1 | transcription factor UNE12-like protein | HC |
           chr1:36000358-35993128 | 20130731
          Length = 355

 Score =  209 bits (531), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 104/155 (67%), Positives = 120/155 (77%)

Query: 128 GQATDPHSXXXXXXXXXXXXXXXXXQELVPSVNKTDRAVMLDEIVDYVKFLRLQVKVLSM 187
           GQATDPHS                 QELVPS+NKTD+A MLDEIVDYVKFLRLQVKVLSM
Sbjct: 198 GQATDPHSIAERLRRERIAERMKALQELVPSINKTDKAAMLDEIVDYVKFLRLQVKVLSM 257

Query: 188 SRLGGAGAVAPLVTDIPLSSVXXXXXXXXRNQPAWEKWSNDGTEKQVAKLMEENIGAAMQ 247
           SRLGGAGAVA LV D+P+S+V         NQ AW KWSNDGTE+QVAKLMEE++GAAMQ
Sbjct: 258 SRLGGAGAVAQLVADVPVSAVEGEDIEGGTNQQAWAKWSNDGTEQQVAKLMEEDVGAAMQ 317

Query: 248 FLQSKALCIMPISLASAIYQSQPSENSSIVKPETS 282
            LQSKALCIMPISLASAI++   S++S+I+KPE++
Sbjct: 318 LLQSKALCIMPISLASAIFRMPQSDSSTIIKPESN 352


>Medtr4g131160.1 | BHLH transcription factor | HC |
           chr4:54719229-54715702 | 20130731
          Length = 400

 Score =  148 bits (373), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 83/147 (56%), Positives = 96/147 (65%), Gaps = 10/147 (6%)

Query: 128 GQATDPHSXXXXXXXXXXXXXXXXXQELVPSVNKTDRAVMLDEIVDYVKFLRLQVKVLSM 187
           GQATDPHS                 QELVP+ NKTD+A MLDEI+DYVKFL++QVKVLSM
Sbjct: 201 GQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQVQVKVLSM 260

Query: 188 SRLGGAGAVAPLVTDIPLSSVXXXXXXXX------RNQPAWEKWSNDG---TEKQVAKLM 238
           SRLGGAGAVAPLV D+    V              RN P     SN+    TE QVAKLM
Sbjct: 261 SRLGGAGAVAPLVADMSSEGVSDCVQTNGNGGVHPRN-PKTASSSNESLTMTEHQVAKLM 319

Query: 239 EENIGAAMQFLQSKALCIMPISLASAI 265
           EE++G+AMQ+LQ K LC+MPISLA+AI
Sbjct: 320 EEDMGSAMQYLQGKGLCLMPISLATAI 346


>Medtr4g131160.2 | BHLH transcription factor | HC |
           chr4:54719229-54715448 | 20130731
          Length = 403

 Score =  148 bits (373), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 83/147 (56%), Positives = 96/147 (65%), Gaps = 10/147 (6%)

Query: 128 GQATDPHSXXXXXXXXXXXXXXXXXQELVPSVNKTDRAVMLDEIVDYVKFLRLQVKVLSM 187
           GQATDPHS                 QELVP+ NKTD+A MLDEI+DYVKFL++QVKVLSM
Sbjct: 204 GQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQVQVKVLSM 263

Query: 188 SRLGGAGAVAPLVTDIPLSSVXXXXXXXX------RNQPAWEKWSNDG---TEKQVAKLM 238
           SRLGGAGAVAPLV D+    V              RN P     SN+    TE QVAKLM
Sbjct: 264 SRLGGAGAVAPLVADMSSEGVSDCVQTNGNGGVHPRN-PKTASSSNESLTMTEHQVAKLM 322

Query: 239 EENIGAAMQFLQSKALCIMPISLASAI 265
           EE++G+AMQ+LQ K LC+MPISLA+AI
Sbjct: 323 EEDMGSAMQYLQGKGLCLMPISLATAI 349


>Medtr1g072530.1 | helix loop helix DNA-binding domain protein | HC
           | chr1:32181215-32184171 | 20130731
          Length = 325

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 12/116 (10%)

Query: 153 QELVPSVNKTDRAVMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVXXXX 212
            EL+P+ +   +A +LD+I+DYVK+L++QVK LS S+L       PLV            
Sbjct: 214 HELLPTPHVGSQAYILDDIIDYVKYLQIQVKELSGSKLQADSNSIPLVFHEGYGHYIK-- 271

Query: 213 XXXXRNQPAWEKWSNDGTEKQVAKLMEENIGAAMQFLQSKALCIMPISLASAIYQS 268
                     E+  N+  E+ +  L+E N  A  Q L++K L ++PI+L   + Q+
Sbjct: 272 ----------EQVLNEPLEEIMGNLLEVNSAATCQLLENKGLVLLPIALVDELNQA 317


>Medtr7g111320.1 | phytochrome-interacting factor 3.1 | HC |
           chr7:45695946-45691940 | 20130731
          Length = 691

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 35/48 (72%), Gaps = 3/48 (6%)

Query: 153 QELVPSVNKTDRAVMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLV 200
           QEL+P+ NK D+A MLDE ++Y+K L+LQ++++SM   GG G   P+ 
Sbjct: 462 QELIPNCNKADKASMLDEAIEYLKSLQLQLQIMSM---GGGGLYMPMT 506


>Medtr1g017350.3 | transcription factor | HC | chr1:4807563-4800948
           | 20130731
          Length = 421

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 128 GQATDPHSXXXXXXXXXXXXXXXXXQELVPSVNK-TDRAVMLDEIVDYVKFLRLQVKVLS 186
           GQAT+ HS                 QELVP  NK T +AVMLDEI++YV+ L+ QV+ LS
Sbjct: 265 GQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLS 324

Query: 187 M 187
           M
Sbjct: 325 M 325


>Medtr1g017350.2 | transcription factor | HC | chr1:4805633-4800948
           | 20130731
          Length = 421

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 128 GQATDPHSXXXXXXXXXXXXXXXXXQELVPSVNK-TDRAVMLDEIVDYVKFLRLQVKVLS 186
           GQAT+ HS                 QELVP  NK T +AVMLDEI++YV+ L+ QV+ LS
Sbjct: 265 GQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLS 324

Query: 187 M 187
           M
Sbjct: 325 M 325


>Medtr1g017350.4 | transcription factor | HC | chr1:4805633-4800948
           | 20130731
          Length = 423

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 128 GQATDPHSXXXXXXXXXXXXXXXXXQELVPSVNK-TDRAVMLDEIVDYVKFLRLQVKVLS 186
           GQAT+ HS                 QELVP  NK T +AVMLDEI++YV+ L+ QV+ LS
Sbjct: 265 GQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLS 324

Query: 187 M 187
           M
Sbjct: 325 M 325


>Medtr1g017350.1 | transcription factor | HC | chr1:4805633-4800948
           | 20130731
          Length = 426

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 128 GQATDPHSXXXXXXXXXXXXXXXXXQELVPSVNK-TDRAVMLDEIVDYVKFLRLQVKVLS 186
           GQAT+ HS                 QELVP  NK T +AVMLDEI++YV+ L+ QV+ LS
Sbjct: 265 GQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLS 324

Query: 187 M 187
           M
Sbjct: 325 M 325


>Medtr1g017350.5 | transcription factor | HC | chr1:4805633-4800948
           | 20130731
          Length = 418

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 128 GQATDPHSXXXXXXXXXXXXXXXXXQELVPSVNK-TDRAVMLDEIVDYVKFLRLQVKVLS 186
           GQAT+ HS                 QELVP  NK T +AVMLDEI++YV+ L+ QV+ LS
Sbjct: 265 GQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLS 324

Query: 187 M 187
           M
Sbjct: 325 M 325


>Medtr7g053410.1 | BHLH transcription factor | HC |
           chr7:18808902-18812670 | 20130731
          Length = 517

 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 128 GQATDPHSXXXXXXXXXXXXXXXXXQELVPSVNK-TDRAVMLDEIVDYVKFLRLQVKVLS 186
           GQATD HS                 Q+LVP  NK T +A+MLDEI++YV+ L+ QV+ LS
Sbjct: 322 GQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLS 381

Query: 187 M 187
           M
Sbjct: 382 M 382


>Medtr7g053410.2 | BHLH transcription factor | HC |
           chr7:18808900-18812617 | 20130731
          Length = 535

 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 128 GQATDPHSXXXXXXXXXXXXXXXXXQELVPSVNK-TDRAVMLDEIVDYVKFLRLQVKVLS 186
           GQATD HS                 Q+LVP  NK T +A+MLDEI++YV+ L+ QV+ LS
Sbjct: 322 GQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLS 381

Query: 187 M 187
           M
Sbjct: 382 M 382


>Medtr1g084980.1 | phytochrome-interacting factor 3.1 | HC |
           chr1:37932621-37937084 | 20130731
          Length = 721

 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 34/46 (73%), Gaps = 4/46 (8%)

Query: 153 QELVPSVNKTDRAVMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAP 198
           QEL+P+ NK D+A MLDE ++Y+K L+LQV+++SM    GAG   P
Sbjct: 492 QELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSM----GAGLYMP 533


>Medtr8g012290.1 | BHLH transcription factor | HC |
           chr8:3449775-3453461 | 20130731
          Length = 497

 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 128 GQATDPHSXXXXXXXXXXXXXXXXXQELVPSVNK-TDRAVMLDEIVDYVKFLRLQVKVLS 186
           GQATD HS                 Q+LVP  NK T +A+MLDEI++YV+ L+ QV+ LS
Sbjct: 296 GQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLS 355

Query: 187 M 187
           M
Sbjct: 356 M 356


>Medtr8g012290.2 | BHLH transcription factor | HC |
           chr8:3449797-3453478 | 20130731
          Length = 498

 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 128 GQATDPHSXXXXXXXXXXXXXXXXXQELVPSVNK-TDRAVMLDEIVDYVKFLRLQVKVLS 186
           GQATD HS                 Q+LVP  NK T +A+MLDEI++YV+ L+ QV+ LS
Sbjct: 296 GQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLS 355

Query: 187 M 187
           M
Sbjct: 356 M 356


>Medtr7g099540.2 | transcription factor | HC |
           chr7:39933891-39938353 | 20130731
          Length = 461

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 33/44 (75%), Gaps = 4/44 (9%)

Query: 153 QELVPSVNKTDRAVMLDEIVDYVKFLRLQVKVLSMSRLGGAGAV 196
           QEL+P  NK+D+A MLDE +DY+K L+LQV+++SM    G G V
Sbjct: 282 QELIPRSNKSDKASMLDEAIDYLKSLQLQVQMMSM----GCGMV 321


>Medtr5g005110.1 | transcription factor | HC | chr5:277903-279787 |
           20130731
          Length = 331

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 32/59 (54%)

Query: 128 GQATDPHSXXXXXXXXXXXXXXXXXQELVPSVNKTDRAVMLDEIVDYVKFLRLQVKVLS 186
           G ATDP S                 Q LVP+  K D + ML+E V YVKFL+LQ+K+LS
Sbjct: 229 GPATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLS 287