Miyakogusa Predicted Gene

Lj5g3v1014550.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1014550.1 Non Characterized Hit- tr|B6T4D5|B6T4D5_MAIZE
Putative uncharacterized protein OS=Zea mays PE=4
SV=1,58.02,5e-19,Ribosomal_S21,Ribosomal protein S21,CUFF.54611.1
         (112 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g464760.1 | ribosomal protein S21 family protein | HC | ch...   172   7e-44
Medtr3g450960.1 | ribosomal protein S21 family protein | HC | ch...    84   4e-17

>Medtr3g464760.1 | ribosomal protein S21 family protein | HC |
           chr3:26066799-26069971 | 20130731
          Length = 112

 Score =  172 bits (435), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 93/112 (83%), Positives = 102/112 (91%)

Query: 1   MNSIAKRLSSLFGKSACATEPLNSGRHQLQQLQQCRGIRVRVFNGNLESALALMQRKMTS 60
           MNS+ +RLS LF +S C T+P N+  HQLQQLQ CRGIRV+V+NGNLE ALALMQRKMTS
Sbjct: 1   MNSVVRRLSGLFRQSGCVTQPFNAQHHQLQQLQPCRGIRVQVYNGNLEGALALMQRKMTS 60

Query: 61  SGIERMIKKEQRFHIKNSEKRVLARKNLERRLRSEDLARKLKAIMIKKVRGL 112
           SGIERMIKKEQRFHIKNSEKRVLARK+LERRLRSEDLARKLK+IMIKKVRGL
Sbjct: 61  SGIERMIKKEQRFHIKNSEKRVLARKSLERRLRSEDLARKLKSIMIKKVRGL 112


>Medtr3g450960.1 | ribosomal protein S21 family protein | HC |
           chr3:17651876-17651400 | 20130731
          Length = 69

 Score = 83.6 bits (205), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/57 (80%), Positives = 50/57 (87%), Gaps = 2/57 (3%)

Query: 54  MQRKMTSSGIERMIKKEQRFHIKNSEKRVLARKNLERRLRSEDLARKLKAIMIKKVR 110
           MQR   +SGIERMIKKE+RFH KNSEKRVLA K+LERRLRS+DL  KLKAIMIKKVR
Sbjct: 1   MQRH--TSGIERMIKKERRFHTKNSEKRVLAEKSLERRLRSQDLCSKLKAIMIKKVR 55