Miyakogusa Predicted Gene

Lj5g3v1003310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1003310.1 Non Characterized Hit- tr|I0YU46|I0YU46_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,44.12,5e-18,seg,NULL,CUFF.54508.1
         (164 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g071630.1 | hypothetical protein | HC | chr1:31801602-3179...   174   4e-44

>Medtr1g071630.1 | hypothetical protein | HC |
           chr1:31801602-31799225 | 20130731
          Length = 165

 Score =  174 bits (440), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 108/166 (65%), Positives = 122/166 (73%), Gaps = 3/166 (1%)

Query: 1   MKRTMPWVXXXXXXXXXXX--XXXXXXXXXTGGKKPQGKSQKEKGAVIDFDALKRYGYKG 58
           MKRTMPW                       TG KK +GKS K+K A IDF+ALKRYGYKG
Sbjct: 1   MKRTMPWSDDDDSSNDESSSLHSDSENDSKTGAKKSKGKSTKQKSAPIDFEALKRYGYKG 60

Query: 59  GPSVLKVPAPKEXXXXXXXXXXTGKEKRVDNKGIEESYEERQKTREALSQGEQLQTVLTR 118
           GPSVLKVP PKE          +GKEKRV  K +EE+YEER+KTREALS GEQ+ TVLTR
Sbjct: 61  GPSVLKVPPPKEDDSKRDWSWSSGKEKRV-EKEVEETYEERKKTREALSLGEQMPTVLTR 119

Query: 119 SEKKNLSFSQKEKRKRELGQASRGKNYVEEEKRLLRDSGVYSGFDA 164
           ++KKNLSFSQKEK+KR+LGQASRGKNYVEEEKRLLRD+GVYSGFD+
Sbjct: 120 NDKKNLSFSQKEKKKRDLGQASRGKNYVEEEKRLLRDNGVYSGFDS 165