Miyakogusa Predicted Gene

Lj5g3v0976250.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0976250.2 tr|D7L1P0|D7L1P0_ARALL Time for coffee
OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_479750
PE=4,30.92,5e-18,seg,NULL,CUFF.54476.2
         (475 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g072160.1 | TIME FOR coffee-like protein, putative | HC | ...   388   e-108
Medtr1g104710.1 | TIME FOR coffee-like protein, putative | HC | ...    92   1e-18

>Medtr1g072160.1 | TIME FOR coffee-like protein, putative | HC |
           chr1:32016258-32010788 | 20130731
          Length = 1199

 Score =  388 bits (996), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 262/491 (53%), Positives = 312/491 (63%), Gaps = 43/491 (8%)

Query: 2   KAIEAEPETLKLASSDIEIEIAELLTGLRSSKGHEFSSQKLEASMDHHALESCHSKDIEK 61
           K I    +T K +SSD+EIEIAELL+GLR+ K  E SS+K+EA+++H+A     S D E 
Sbjct: 167 KVIGDVDKTSKSSSSDMEIEIAELLSGLRTFKNLESSSEKVEATINHNA-----SMDTET 221

Query: 62  NKLEEFKDPKYSCEDLLRIQGQE------QPADVDCHENGSSAVPKEDIGEDKVNPXXXX 115
            K E +     S E+L+RIQ  +         +V CHENGS  V  E     KVN     
Sbjct: 222 KKWEVYN----STEELVRIQCDQAVDAGCHDGNVTCHENGSLEVEIE-----KVNSGARF 272

Query: 116 XXXXXXXXRFDAPTNESQSCSKLDA-DKQDSASTRMMCDVPDANTKRVGKFEIDLMATPP 174
                        T  SQSC KLDA DK DS STR M   P   T+R+GKFEIDLMA PP
Sbjct: 273 GGASADGKPLST-TRGSQSCMKLDAADKHDSVSTREMSTAPA--TQRLGKFEIDLMAPPP 329

Query: 175 MMLSLEGDDLSKSQLTSETKALAPDVEMKRIDSIEVEDKAERPVNQEKTP-EEIEEANMI 233
           MMLS +G+DLS+  LTS +  LAPD+EMKR +SI+VEDK ER    EK P E  EEANM 
Sbjct: 330 MMLSPKGNDLSRGNLTSASIKLAPDLEMKRENSIKVEDKVERQATVEKNPEEIEEEANMA 389

Query: 234 EFKKKLNVLKHDLVTPNNDNDIMTNNKLEKQDRNKEQPSISSNPKVQKIDHSSSVPLPAG 293
                +NVLKH L  PNNDNDI  NNKLE+Q RNKEQP   SNPKV+K   SSSVPLPA 
Sbjct: 390 ----TMNVLKHYLEKPNNDNDIKINNKLEEQGRNKEQPIALSNPKVEKTACSSSVPLPAA 445

Query: 294 VSGRPSNLTSI-------GCKPLLQKVGETDKTKGGSSKSPQGVNSVLSQPKRKRCATHY 346
           VSG PS+L+ I       GC P LQ V + + T  GSS S Q VN  LS+P+ KRCATHY
Sbjct: 446 VSGLPSSLSPIGSITMTGGCTPPLQTVVKMNTTT-GSSTSAQRVNFALSEPQPKRCATHY 504

Query: 347 YIARNILHQQYTKMSPPLPAAIGPGSLCGIKPNNVDCVPSS-----SKQSQKHFPGVNQK 401
            IAR IL +Q+TKM+P L AAIG GSLC  K NNV+C+ S+     +KQSQKH P ++Q 
Sbjct: 505 QIARKILLKQFTKMNPLLSAAIGSGSLCAPKTNNVNCLLSAESMIINKQSQKHLPSLDQN 564

Query: 402 GAQEKVLVATSDPSLAAFRSSNNANPMDSTHMQLVLQQGPYPGSIGTLV-GPAFVFGPGQ 460
           G QEK L    D +L A ++SNN NP+DS H   +LQQGP+ GS G LV GPAFVF P  
Sbjct: 565 GTQEKRLTVIGDHNLTATKNSNNPNPVDSIHQMHLLQQGPFAGSTGNLVHGPAFVFSPAH 624

Query: 461 HQASVAAPTNQ 471
           +QASVAA TNQ
Sbjct: 625 YQASVAAATNQ 635


>Medtr1g104710.1 | TIME FOR coffee-like protein, putative | HC |
           chr1:47174909-47167865 | 20130731
          Length = 1554

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 169/352 (48%), Gaps = 36/352 (10%)

Query: 127 APTNESQSCSKLDADKQDSASTRMMCDVPDANTKRVGKFEIDLMATPPMMLS---LEGDD 183
           +P  ES     +D  ++D  +T+    + ++  +   KF+IDLMA PP + S      ++
Sbjct: 434 SPKKESSVLQAVDDVREDVKATKANLTISESENQLKEKFQIDLMAPPPSLRSSPERVVEN 493

Query: 184 LSKSQLTSETKALAPDVEMKRIDSIEVEDKAERPVNQEKTPEEIEEANMIEFKK----KL 239
            S  ++      +  D +  ++D + V +  +     E+   E + A +++ ++    +L
Sbjct: 494 NSVVEVEKVKHVMKEDQKSHKMDEVMVVEIEKVKAKAEE--NEFQRAPIVQKERGIDLQL 551

Query: 240 NVLKHDLVTPNNDNDIMTNNKLEKQDRNKEQPSISSNPKVQKIDHSSSVPLPAGVSGRPS 299
            + K D V  N + + +  NK + Q+  +    +     ++K   S+S+P+P  V   P 
Sbjct: 552 ELEKTDRVDSNGNGNHL--NKKQHQNVQRHHHQLQQQTNLEKNVQSNSLPIPMNVPSWPG 609

Query: 300 NLTSIGCKPLLQKVGETDKTKGGSSKSPQGVNSVLSQPKRKRCATHYYIARNILH-QQYT 358
            L S+G    LQ V   D T   S+  P   + + +QP+ KRCATH +IA+ IL+ QQ  
Sbjct: 610 GLPSMGYMTPLQGVVSMDGTTMPSAAIPP-PHLLFNQPRPKRCATHCHIAQKILYNQQIA 668

Query: 359 KMSPPLPAAIGPGSLCGIKP-NNVDCVPSSSKQSQKHFPGVNQKGAQEKVLVATSD--PS 415
           +M+P  PAA G  SL G KP +N+  VP  S +       ++      +   +T D  PS
Sbjct: 669 RMNPFWPAAAGSASLYGAKPGSNLSVVPVPSTE-------LHSGNIHGRATNSTQDKGPS 721

Query: 416 LAAF-------RSSNNANPMDSTHMQLVLQQ----GPYPGSIGTLVGPAFVF 456
           LA F       +SS  +N  +S+   ++LQQ    G  P +I  L GP F+F
Sbjct: 722 LAMFPGHIGKDKSSQPSNVDNSSRKPILLQQTLPSGAAPSNI--LHGPTFIF 771