Miyakogusa Predicted Gene

Lj5g3v0975900.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0975900.2 Non Characterized Hit- tr|I3T9W4|I3T9W4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.31,0,RNA
polymerase subunit,RNA polymerase, Rpb8; DNA-DIRECTED RNA POLYMERASES
I, II, AND III SUBUNIT RPA,CUFF.54466.2
         (144 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g056890.2 | DNA-directed RNA polymerase I, II | HC | chr1:...   261   1e-70
Medtr1g056890.1 | DNA-directed RNA polymerase I, II | HC | chr1:...   261   1e-70
Medtr6g090500.1 | DNA-directed RNA polymerase I, II | HC | chr6:...   120   3e-28
Medtr6g090500.2 | DNA-directed RNA polymerase I, II | HC | chr6:...   120   3e-28
Medtr4g133090.4 | DNA-directed RNA polymerase I, II | HC | chr4:...   120   3e-28
Medtr4g133090.1 | DNA-directed RNA polymerase I, II | HC | chr4:...   120   3e-28
Medtr4g133090.3 | DNA-directed RNA polymerase I, II | HC | chr4:...   120   3e-28
Medtr4g133090.2 | DNA-directed RNA polymerase I, II | HC | chr4:...   120   3e-28

>Medtr1g056890.2 | DNA-directed RNA polymerase I, II | HC |
           chr1:24915813-24911971 | 20130731
          Length = 145

 Score =  261 bits (667), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 126/145 (86%), Positives = 138/145 (95%), Gaps = 1/145 (0%)

Query: 1   MVEILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALL 60
           MVE L +DIFRVEK+NPDDKKLFEKVTRIEARSE+FDMFM LDINSELYPLK+GQKF+L 
Sbjct: 1   MVESLLEDIFRVEKVNPDDKKLFEKVTRIEARSEKFDMFMQLDINSELYPLKMGQKFSLA 60

Query: 61  LVPTLNPDGTPDTGYYIPGNRQSLADNFEYVMYGKLYKISEGS-GREKAELNISFGGLLM 119
           LVPTLNPDGTPDTGYY PGNRQS+ADN+EYVMYGKLY+++EGS GREKAELNISFGGLLM
Sbjct: 61  LVPTLNPDGTPDTGYYNPGNRQSIADNYEYVMYGKLYRVTEGSGGREKAELNISFGGLLM 120

Query: 120 MMKGDHSHCNKFELDQRLYLLMRKV 144
           ++KGDHSH NKFELDQRLYLLMRKV
Sbjct: 121 LLKGDHSHFNKFELDQRLYLLMRKV 145


>Medtr1g056890.1 | DNA-directed RNA polymerase I, II | HC |
           chr1:24915821-24911996 | 20130731
          Length = 145

 Score =  261 bits (667), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 126/145 (86%), Positives = 138/145 (95%), Gaps = 1/145 (0%)

Query: 1   MVEILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALL 60
           MVE L +DIFRVEK+NPDDKKLFEKVTRIEARSE+FDMFM LDINSELYPLK+GQKF+L 
Sbjct: 1   MVESLLEDIFRVEKVNPDDKKLFEKVTRIEARSEKFDMFMQLDINSELYPLKMGQKFSLA 60

Query: 61  LVPTLNPDGTPDTGYYIPGNRQSLADNFEYVMYGKLYKISEGS-GREKAELNISFGGLLM 119
           LVPTLNPDGTPDTGYY PGNRQS+ADN+EYVMYGKLY+++EGS GREKAELNISFGGLLM
Sbjct: 61  LVPTLNPDGTPDTGYYNPGNRQSIADNYEYVMYGKLYRVTEGSGGREKAELNISFGGLLM 120

Query: 120 MMKGDHSHCNKFELDQRLYLLMRKV 144
           ++KGDHSH NKFELDQRLYLLMRKV
Sbjct: 121 LLKGDHSHFNKFELDQRLYLLMRKV 145


>Medtr6g090500.1 | DNA-directed RNA polymerase I, II | HC |
           chr6:34012888-34016300 | 20130731
          Length = 140

 Score =  120 bits (302), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 99/149 (66%), Gaps = 16/149 (10%)

Query: 1   MVEILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALL 60
           M E+LFDD F++  +NP+ +K ++KV+RI ARSE+  M M LD+N+E+YP+   +KF L 
Sbjct: 1   MSELLFDDFFKIVDVNPNGEK-YDKVSRIVARSEKHGMHMLLDVNTEIYPMDRKEKFLLA 59

Query: 61  LVPTL--NPDGTPDTGYYIPGNRQSLADNFEYVMYGKLYKI-SEGSGREKAELNI--SFG 115
           L P+L  N    P           S+ + FEY+MYG+LY I ++G  R   E+ +  SFG
Sbjct: 60  LSPSLVLNTKDGP----------VSIQEKFEYIMYGRLYDIKADGLSRSPPEVEVYASFG 109

Query: 116 GLLMMMKGDHSHCNKFELDQRLYLLMRKV 144
           GL +M++GD SHC KF +DQ+L+LL+RK+
Sbjct: 110 GLQLMLRGDPSHCVKFAVDQKLFLLIRKL 138


>Medtr6g090500.2 | DNA-directed RNA polymerase I, II | HC |
           chr6:34012888-34016300 | 20130731
          Length = 140

 Score =  120 bits (302), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 99/149 (66%), Gaps = 16/149 (10%)

Query: 1   MVEILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALL 60
           M E+LFDD F++  +NP+ +K ++KV+RI ARSE+  M M LD+N+E+YP+   +KF L 
Sbjct: 1   MSELLFDDFFKIVDVNPNGEK-YDKVSRIVARSEKHGMHMLLDVNTEIYPMDRKEKFLLA 59

Query: 61  LVPTL--NPDGTPDTGYYIPGNRQSLADNFEYVMYGKLYKI-SEGSGREKAELNI--SFG 115
           L P+L  N    P           S+ + FEY+MYG+LY I ++G  R   E+ +  SFG
Sbjct: 60  LSPSLVLNTKDGP----------VSIQEKFEYIMYGRLYDIKADGLSRSPPEVEVYASFG 109

Query: 116 GLLMMMKGDHSHCNKFELDQRLYLLMRKV 144
           GL +M++GD SHC KF +DQ+L+LL+RK+
Sbjct: 110 GLQLMLRGDPSHCVKFAVDQKLFLLIRKL 138


>Medtr4g133090.4 | DNA-directed RNA polymerase I, II | HC |
           chr4:55679027-55684512 | 20130731
          Length = 140

 Score =  120 bits (302), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 99/149 (66%), Gaps = 16/149 (10%)

Query: 1   MVEILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALL 60
           M E+LFDD F++  +NP+ +K ++KV+RI ARSE+  M M LD+N+E+YP+   +KF L 
Sbjct: 1   MSELLFDDFFKIVDVNPNGEK-YDKVSRIVARSEKHGMHMLLDVNTEIYPMDRKEKFLLA 59

Query: 61  LVPTL--NPDGTPDTGYYIPGNRQSLADNFEYVMYGKLYKI-SEGSGREKAELNI--SFG 115
           L P+L  N    P           S+ + FEY+MYG+LY I ++G  R   E+ +  SFG
Sbjct: 60  LSPSLVLNTKDGP----------VSIQEKFEYIMYGRLYDIKADGLSRSPPEVEVYASFG 109

Query: 116 GLLMMMKGDHSHCNKFELDQRLYLLMRKV 144
           GL +M++GD SHC KF +DQ+L+LL+RK+
Sbjct: 110 GLQLMLRGDPSHCVKFAVDQKLFLLIRKL 138


>Medtr4g133090.1 | DNA-directed RNA polymerase I, II | HC |
           chr4:55679027-55684512 | 20130731
          Length = 140

 Score =  120 bits (302), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 99/149 (66%), Gaps = 16/149 (10%)

Query: 1   MVEILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALL 60
           M E+LFDD F++  +NP+ +K ++KV+RI ARSE+  M M LD+N+E+YP+   +KF L 
Sbjct: 1   MSELLFDDFFKIVDVNPNGEK-YDKVSRIVARSEKHGMHMLLDVNTEIYPMDRKEKFLLA 59

Query: 61  LVPTL--NPDGTPDTGYYIPGNRQSLADNFEYVMYGKLYKI-SEGSGREKAELNI--SFG 115
           L P+L  N    P           S+ + FEY+MYG+LY I ++G  R   E+ +  SFG
Sbjct: 60  LSPSLVLNTKDGP----------VSIQEKFEYIMYGRLYDIKADGLSRSPPEVEVYASFG 109

Query: 116 GLLMMMKGDHSHCNKFELDQRLYLLMRKV 144
           GL +M++GD SHC KF +DQ+L+LL+RK+
Sbjct: 110 GLQLMLRGDPSHCVKFAVDQKLFLLIRKL 138


>Medtr4g133090.3 | DNA-directed RNA polymerase I, II | HC |
           chr4:55679017-55684501 | 20130731
          Length = 140

 Score =  120 bits (302), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 99/149 (66%), Gaps = 16/149 (10%)

Query: 1   MVEILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALL 60
           M E+LFDD F++  +NP+ +K ++KV+RI ARSE+  M M LD+N+E+YP+   +KF L 
Sbjct: 1   MSELLFDDFFKIVDVNPNGEK-YDKVSRIVARSEKHGMHMLLDVNTEIYPMDRKEKFLLA 59

Query: 61  LVPTL--NPDGTPDTGYYIPGNRQSLADNFEYVMYGKLYKI-SEGSGREKAELNI--SFG 115
           L P+L  N    P           S+ + FEY+MYG+LY I ++G  R   E+ +  SFG
Sbjct: 60  LSPSLVLNTKDGP----------VSIQEKFEYIMYGRLYDIKADGLSRSPPEVEVYASFG 109

Query: 116 GLLMMMKGDHSHCNKFELDQRLYLLMRKV 144
           GL +M++GD SHC KF +DQ+L+LL+RK+
Sbjct: 110 GLQLMLRGDPSHCVKFAVDQKLFLLIRKL 138


>Medtr4g133090.2 | DNA-directed RNA polymerase I, II | HC |
           chr4:55678930-55684512 | 20130731
          Length = 140

 Score =  120 bits (302), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 99/149 (66%), Gaps = 16/149 (10%)

Query: 1   MVEILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALL 60
           M E+LFDD F++  +NP+ +K ++KV+RI ARSE+  M M LD+N+E+YP+   +KF L 
Sbjct: 1   MSELLFDDFFKIVDVNPNGEK-YDKVSRIVARSEKHGMHMLLDVNTEIYPMDRKEKFLLA 59

Query: 61  LVPTL--NPDGTPDTGYYIPGNRQSLADNFEYVMYGKLYKI-SEGSGREKAELNI--SFG 115
           L P+L  N    P           S+ + FEY+MYG+LY I ++G  R   E+ +  SFG
Sbjct: 60  LSPSLVLNTKDGP----------VSIQEKFEYIMYGRLYDIKADGLSRSPPEVEVYASFG 109

Query: 116 GLLMMMKGDHSHCNKFELDQRLYLLMRKV 144
           GL +M++GD SHC KF +DQ+L+LL+RK+
Sbjct: 110 GLQLMLRGDPSHCVKFAVDQKLFLLIRKL 138