Miyakogusa Predicted Gene

Lj5g3v0975430.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0975430.1 Non Characterized Hit- tr|I3T1V6|I3T1V6_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4 SV=1,99.13,0,snRNP Sm
proteins,Ribonucleoprotein LSM domain, eukaryotic/archaea-type;
LSM,Ribonucleoprotein LSM d,CUFF.54415.1
         (115 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g072370.1 | small nuclear ribonucleoprotein | HC | chr1:32...   190   3e-49
Medtr7g094680.1 | small nuclear ribonucleoprotein | HC | chr7:37...   185   6e-48
Medtr8g092200.1 | small nuclear ribonucleoprotein | HC | chr8:38...    51   2e-07

>Medtr1g072370.1 | small nuclear ribonucleoprotein | HC |
          chr1:32124771-32120319 | 20130731
          Length = 114

 Score =  190 bits (482), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 96/98 (97%), Positives = 96/98 (97%)

Query: 1  MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKAVKLTLKGKNPVTLDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLK VKLTLKGKNPVTLDHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60

Query: 61 RGTNIRYYILPDSLNLETLLVEEAPRVKPKKPTAGKPL 98
          RG NIRYYILPDSLNLETLLVEEAPRVKPKKPTAGKPL
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTAGKPL 98


>Medtr7g094680.1 | small nuclear ribonucleoprotein | HC |
          chr7:37778374-37781262 | 20130731
          Length = 115

 Score =  185 bits (470), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 96/99 (96%), Positives = 96/99 (96%), Gaps = 1/99 (1%)

Query: 1  MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKAVKLTLKGKNPVTLDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLK VKLTLKGKNPVTLDHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60

Query: 61 RGTNIRYYILPDSLNLETLLVEEAPRVKPKKPTA-GKPL 98
          RG NIRYYILPDSLNLETLLVEEAPRVKPKKPTA GKPL
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTAGGKPL 99


>Medtr8g092200.1 | small nuclear ribonucleoprotein | HC |
           chr8:38530552-38528326 | 20130731
          Length = 131

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 48/92 (52%)

Query: 4   VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKAVKLTLKGKNPVTLDHLSVRGT 63
           V+ L + +   V++ELK+G +  G +   + + N  L+++  T K      L+H+ +RG+
Sbjct: 9   VKLLHEASGHVVTVELKSGELYRGNMIECEDNWNCQLESITYTAKDGKTSQLEHVFIRGS 68

Query: 64  NIRYYILPDSLNLETLLVEEAPRVKPKKPTAG 95
            +R+ ++PD L    +      R+K K  + G
Sbjct: 69  KVRFMVIPDMLKNAPMFKRLDARIKGKGASLG 100